Variant report

Variant	rs1446788
Chromosome Location	chr13:85204036-85204037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11620279	0.85[ASN][1000 genomes]
rs12583171	0.92[AFR][1000 genomes]
rs12877791	0.85[ASN][1000 genomes]
rs1446789	0.98[AFR][1000 genomes]
rs17324041	0.85[ASN][1000 genomes]
rs1867899	0.94[AFR][1000 genomes]
rs3099512	0.93[AFR][1000 genomes]
rs3099514	0.90[AFR][1000 genomes]
rs3099515	0.88[AFR][1000 genomes]
rs3099516	0.94[AFR][1000 genomes]
rs3099517	0.94[AFR][1000 genomes]
rs3099518	0.94[AFR][1000 genomes]
rs3099520	0.94[AFR][1000 genomes]
rs3099521	0.94[AFR][1000 genomes]
rs3099522	0.94[AFR][1000 genomes]
rs3099523	0.94[AFR][1000 genomes]
rs3099524	0.92[AFR][1000 genomes]
rs3099525	0.91[AFR][1000 genomes]
rs3099526	0.89[AFR][1000 genomes]
rs3099527	0.91[AFR][1000 genomes]
rs3099528	0.91[AFR][1000 genomes]
rs3099529	0.91[AFR][1000 genomes]
rs3127539	0.94[AFR][1000 genomes]
rs3127541	0.82[AFR][1000 genomes]
rs3127542	0.94[AFR][1000 genomes]
rs3127543	0.94[AFR][1000 genomes]
rs41290720	0.81[ASN][1000 genomes]
rs59883236	0.88[ASN][1000 genomes]
rs59952832	0.81[ASN][1000 genomes]
rs60660216	0.81[ASN][1000 genomes]
rs7324093	0.81[ASN][1000 genomes]
rs7993320	0.81[ASN][1000 genomes]
rs9565948	0.94[ASN][1000 genomes]
rs9565949	1.00[ASN][1000 genomes]
rs9565950	1.00[ASN][1000 genomes]
rs9565952	0.88[ASN][1000 genomes]
rs9575603	0.90[ASN][1000 genomes]
rs9575611	0.94[ASN][1000 genomes]
rs9575619	1.00[ASN][1000 genomes]
rs9575620	1.00[ASN][1000 genomes]
rs9575622	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3343265	chr13:85203772-85204044	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85200200-85211400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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