Variant report

Variant	rs9575611
Chromosome Location	chr13:85182030-85182031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11618006	0.85[ASN][1000 genomes]
rs11619718	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11620279	0.90[ASN][1000 genomes]
rs11620414	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12877791	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1446758	0.83[ASN][1000 genomes]
rs1446788	0.94[ASN][1000 genomes]
rs17324041	0.90[ASN][1000 genomes]
rs41290720	0.86[ASN][1000 genomes]
rs59883236	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59952832	0.86[ASN][1000 genomes]
rs60660216	0.86[ASN][1000 genomes]
rs7324093	0.86[ASN][1000 genomes]
rs7993320	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8000094	0.85[ASN][1000 genomes]
rs9565948	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565949	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9565950	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9565952	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9565958	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9575603	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9575619	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9575620	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9575622	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9575624	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9575626	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9575627	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9575628	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9575629	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9575630	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832666	chr13:85028182-85193796	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85180600-85182200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:85180600-85182400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:85180800-85182400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:85180800-85182400	Enhancers	Osteobl	bone
5	chr13:85181000-85182200	Enhancers	Colon Smooth Muscle	Colon
6	chr13:85181000-85182400	Enhancers	Rectal Smooth Muscle	rectum
7	chr13:85181200-85182200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:85181200-85182400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:85181400-85182200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:85181400-85182200	Enhancers	NH-A	brain
11	chr13:85181600-85182200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:85181600-85182200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr13:85181600-85182200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr13:85181600-85182400	Enhancers	HMEC	breast
15	chr13:85182000-85182400	Enhancers	NHEK	skin

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