Variant report

Variant	rs11622014
Chromosome Location	chr14:66041645-66041646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10483780	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11158596	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11158601	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158602	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11620749	0.82[EUR][1000 genomes]
rs11621680	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11622271	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11622829	0.83[EUR][1000 genomes]
rs11624045	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11624104	0.81[EUR][1000 genomes]
rs11627067	0.82[EUR][1000 genomes]
rs11627084	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11627184	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11627185	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11628196	0.84[EUR][1000 genomes]
rs11628765	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12586842	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12588838	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12589698	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12879202	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12879805	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12879971	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12882200	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12883382	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12883815	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12886334	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12887134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12889002	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12890123	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12890902	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12890978	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12892058	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12894902	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12895074	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12896663	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1535173	0.81[EUR][1000 genomes]
rs1953416	0.81[EUR][1000 genomes]
rs1958561	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1998036	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2002692	0.82[EUR][1000 genomes]
rs2064694	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2149841	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2184603	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2268961	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2268962	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2300865	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2411351	0.84[EUR][1000 genomes]
rs2411355	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2411357	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2411816	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35664643	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3783709	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3825640	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4581615	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4899179	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4902400	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4902407	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67957534	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7142651	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7146742	0.99[ASN][1000 genomes]
rs7146829	0.81[EUR][1000 genomes]
rs7153297	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7154536	0.88[ASN][1000 genomes]
rs7155541	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161123	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs743085	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7493004	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8005710	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8010876	0.80[EUR][1000 genomes]
rs8012278	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8018278	0.84[EUR][1000 genomes]
rs867972	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs883081	0.83[EUR][1000 genomes]
rs883082	0.81[EUR][1000 genomes]
rs9796385	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65995400-66061000	Weak transcription	Gastric	stomach
2	chr14:66021400-66046400	Weak transcription	Thymus	Thymus
3	chr14:66021800-66043000	Weak transcription	Fetal Intestine Small	intestine
4	chr14:66022400-66042200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:66022400-66047800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr14:66022400-66052400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:66023200-66052000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:66023200-66054400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:66026800-66042200	Weak transcription	Placenta	Placenta
10	chr14:66026800-66048800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr14:66027600-66044200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:66027800-66041800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:66028600-66042400	Weak transcription	NH-A	brain
14	chr14:66028800-66042600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:66028800-66044200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr14:66032000-66042400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:66032000-66060200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr14:66032600-66060800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:66033200-66053600	Weak transcription	Small Intestine	intestine
20	chr14:66034200-66044600	Weak transcription	NHDF-Ad	bronchial
21	chr14:66034200-66045400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:66034400-66045800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:66034600-66046400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr14:66035800-66054800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr14:66035800-66057400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr14:66036600-66042200	Weak transcription	Pancreas	Pancrea
27	chr14:66038400-66042400	Weak transcription	Brain Germinal Matrix	brain
28	chr14:66039200-66054400	Weak transcription	Primary T cells from cord blood	blood
29	chr14:66039600-66047600	Weak transcription	Brain Anterior Caudate	brain
30	chr14:66039800-66042200	Weak transcription	HSMMtube	muscle
31	chr14:66039800-66043200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr14:66039800-66058000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr14:66039800-66061200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr14:66040000-66042000	Weak transcription	Brain Substantia Nigra	brain
35	chr14:66040600-66043400	Enhancers	Brain Angular Gyrus	brain
36	chr14:66041000-66042000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:66041000-66042000	Weak transcription	Brain Hippocampus Middle	brain
38	chr14:66041000-66043000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:66041000-66044800	Weak transcription	HUVEC	blood vessel
40	chr14:66041000-66045600	Weak transcription	Fetal Intestine Large	intestine
41	chr14:66041000-66059000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr14:66041000-66060800	Weak transcription	Dnd41	blood
43	chr14:66041200-66042800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr14:66041200-66060800	Weak transcription	GM12878-XiMat	blood
45	chr14:66041200-66061000	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr14:66041400-66041800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr14:66041400-66041800	Enhancers	HepG2	liver
48	chr14:66041400-66043000	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr14:66041600-66049400	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links