Variant report

Variant	rs9796385
Chromosome Location	chr14:66101219-66101220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr14:66100828-66101263	K562	blood:	n/a	n/a

Variant related genes	Relation type
FUT8	TF binding region

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10483780	0.88[AFR][1000 genomes]
rs11158601	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11158602	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11621680	0.85[ASN][1000 genomes]
rs11622014	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11622271	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11624045	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11627084	0.88[AFR][1000 genomes]
rs11627184	0.86[AMR][1000 genomes]
rs11627185	0.86[AMR][1000 genomes]
rs11628765	0.82[ASN][1000 genomes]
rs12586842	0.81[AMR][1000 genomes]
rs12588838	0.82[ASN][1000 genomes]
rs12879202	0.88[AFR][1000 genomes]
rs12879805	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12879971	0.80[AFR][1000 genomes]
rs12882200	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12883382	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12886334	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12887134	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12889002	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12890123	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12890902	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12890978	0.88[AFR][1000 genomes]
rs12892058	0.80[AFR][1000 genomes]
rs12894902	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12896663	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1958561	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1998036	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2064694	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2149841	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2268961	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2268962	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2300865	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2411355	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2411357	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2411816	0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs35664643	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3783709	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3825640	0.88[AFR][1000 genomes]
rs4581615	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902407	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67957534	0.86[AMR][1000 genomes]
rs7142651	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7146742	0.85[ASN][1000 genomes]
rs7153297	0.88[AFR][1000 genomes]
rs7155541	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7161123	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs743085	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7493004	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8005710	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8012278	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs867972	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66077600-66114400	Weak transcription	Ovary	ovary
2	chr14:66079400-66104400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:66079600-66104400	Weak transcription	Gastric	stomach
4	chr14:66080800-66117600	Weak transcription	Left Ventricle	heart
5	chr14:66081400-66142200	Weak transcription	Thymus	Thymus
6	chr14:66081800-66112400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:66082200-66112600	Weak transcription	NHDF-Ad	bronchial
8	chr14:66082600-66101400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:66082800-66117600	Weak transcription	Aorta	Aorta
10	chr14:66083000-66101600	Weak transcription	Brain Germinal Matrix	brain
11	chr14:66083200-66103200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr14:66084600-66104400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:66084800-66104000	Weak transcription	Stomach Mucosa	stomach
14	chr14:66086400-66119600	Weak transcription	Pancreas	Pancrea
15	chr14:66088200-66101400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:66090600-66103200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr14:66090800-66145000	Weak transcription	Small Intestine	intestine
18	chr14:66091800-66104000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr14:66092800-66141000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr14:66093800-66104200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr14:66095200-66101800	Weak transcription	Fetal Lung	lung
22	chr14:66096000-66105400	Weak transcription	HUVEC	blood vessel
23	chr14:66096600-66103200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr14:66096800-66103000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr14:66097800-66104600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr14:66098000-66102200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:66098000-66102800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr14:66098000-66104400	Weak transcription	NH-A	brain
29	chr14:66098000-66116000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:66098000-66125000	Weak transcription	Brain Substantia Nigra	brain
31	chr14:66098200-66101600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr14:66098200-66101800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr14:66098200-66102600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr14:66098200-66103000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr14:66098200-66115200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr14:66098200-66118800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr14:66098400-66101600	Weak transcription	GM12878-XiMat	blood
38	chr14:66098400-66103200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr14:66098600-66101600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr14:66099000-66104400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr14:66099000-66135200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr14:66099200-66104400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr14:66099200-66115200	Weak transcription	Placenta	Placenta
44	chr14:66099200-66135800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr14:66099200-66144000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr14:66099400-66101400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:66099400-66104400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr14:66099400-66104400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr14:66099600-66101800	Weak transcription	Primary T cells from cord blood	blood
50	chr14:66099600-66103000	Weak transcription	Primary B cells from peripheral blood	blood

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