Variant report

Variant	rs11626118
Chromosome Location	chr10:96921909-96921910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11622034	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622736	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622795	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11625924	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627346	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12433553	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12435055	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17108549	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17108591	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17108710	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17108729	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17108735	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2415523	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56231378	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56869057	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58589656	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58904099	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59717515	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62001097	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62001098	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62001099	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72645014	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72645015	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs74050459	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8005437	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8005797	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8007642	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs927296	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs983694	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv517863	chr10:96904057-96928702	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3396941	chr10:96921262-96925460	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96918800-96923200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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