Variant report

Variant	rs17108591
Chromosome Location	chr14:39413518-39413519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39412833..39415383-chr14:39419578..39422326,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11622034	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11622736	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11622795	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11625924	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11626118	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11627346	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12433553	0.90[ASN][1000 genomes]
rs12435055	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17108549	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17108710	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17108729	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17108735	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2415523	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56231378	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56869057	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58589656	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58904099	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59717515	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62001097	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62001098	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62001099	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72645014	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72645015	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs74050459	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8005437	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8005797	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8007642	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs927296	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs983694	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv901656	chr14:39370726-39423339	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv901657	chr14:39410706-39460072	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39412000-39413800	Enhancers	Brain Hippocampus Middle	brain
2	chr14:39412200-39414400	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr14:39412400-39416200	Enhancers	Brain Substantia Nigra	brain
4	chr14:39412800-39413800	Enhancers	Brain Cingulate Gyrus	brain
5	chr14:39412800-39413800	Weak transcription	Pancreas	Pancrea
6	chr14:39412800-39417800	Weak transcription	Left Ventricle	heart
7	chr14:39413000-39416600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:39413200-39413600	Enhancers	Brain Anterior Caudate	brain
9	chr14:39413200-39413600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:39413400-39413800	Enhancers	Brain Angular Gyrus	brain

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