Variant report

Variant	rs11626368
Chromosome Location	chr14:71920585-71920586
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71894769..71896723-chr14:71920391..71921906,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11624555	0.99[EUR][1000 genomes]
rs11627196	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11629264	0.80[ASN][1000 genomes]
rs55881312	0.85[ASN][1000 genomes]
rs56169848	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56333151	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72728459	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72728502	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv976298	chr14:71917066-71925965	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71900000-71927200	Weak transcription	Primary B cells from cord blood	blood
2	chr14:71906400-71927000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:71907000-71930000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:71907000-71930600	Weak transcription	HSMM	muscle
5	chr14:71907200-71921400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:71907400-71921400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:71908200-71935400	Weak transcription	Primary T cells from cord blood	blood
8	chr14:71911800-71921600	Weak transcription	Brain Angular Gyrus	brain
9	chr14:71912800-71921600	Weak transcription	Aorta	Aorta
10	chr14:71913200-71927000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:71914000-71927000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr14:71915800-71938600	Weak transcription	Small Intestine	intestine
13	chr14:71916000-71921600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:71916400-71921400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr14:71916400-71932000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr14:71916600-71921600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:71916600-71921600	Weak transcription	Fetal Heart	heart
18	chr14:71916600-71932800	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:71917200-71921400	Weak transcription	Stomach Mucosa	stomach
20	chr14:71919800-71921400	Weak transcription	Osteobl	bone
21	chr14:71919800-71926000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:71919800-71926800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:71920000-71921600	Weak transcription	NHEK	skin
24	chr14:71920000-71927600	Weak transcription	GM12878-XiMat	blood
25	chr14:71920200-71921600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr14:71920200-71921600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr14:71920200-71921600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr14:71920200-71921600	Weak transcription	NHDF-Ad	bronchial
29	chr14:71920200-71926400	Weak transcription	HMEC	breast
30	chr14:71920200-71931800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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