Variant report

Variant	rs72728459
Chromosome Location	chr14:71853525-71853526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71786431..71788612-chr14:71852698..71854488,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259146	Chromatin interaction
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10131152	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11624555	0.85[EUR][1000 genomes]
rs11626368	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11627196	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17109223	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17109228	0.90[EUR][1000 genomes]
rs55881312	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56169848	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56333151	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72728502	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71837400-71855800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:71844800-71858600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:71845000-71865200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:71845200-71854400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:71845800-71865200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:71846000-71855600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:71846200-71857400	Weak transcription	Primary B cells from cord blood	blood
8	chr14:71847400-71854000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:71847400-71855800	Weak transcription	NH-A	brain
10	chr14:71847600-71854600	Weak transcription	Hela-S3	cervix
11	chr14:71847600-71867600	Weak transcription	Fetal Lung	lung
12	chr14:71847600-71869000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:71848600-71867000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:71849800-71855800	Enhancers	Stomach Mucosa	stomach
15	chr14:71849800-71872200	Weak transcription	Fetal Intestine Small	intestine
16	chr14:71850600-71861000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:71850800-71855200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr14:71850800-71855200	Weak transcription	Placenta	Placenta
19	chr14:71850800-71862000	Weak transcription	Aorta	Aorta
20	chr14:71851200-71854600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:71851200-71855200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:71851200-71860200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:71851200-71874200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:71851400-71854800	Weak transcription	NHEK	skin
25	chr14:71851400-71878200	Weak transcription	Pancreas	Pancrea
26	chr14:71851600-71860800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:71851800-71855400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr14:71851800-71858400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:71851800-71860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:71852000-71858600	Weak transcription	Spleen	Spleen
31	chr14:71852200-71854000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr14:71852200-71854400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr14:71852200-71854400	Weak transcription	Fetal Heart	heart
34	chr14:71852200-71860200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:71852200-71860800	Weak transcription	Osteobl	bone
36	chr14:71852400-71854400	Weak transcription	GM12878-XiMat	blood
37	chr14:71853000-71860400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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