Variant report

Variant	rs17109228
Chromosome Location	chr14:71772483-71772484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10131152	0.95[EUR][1000 genomes]
rs11624555	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11627196	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs17109223	0.94[CEU][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs55881312	0.86[EUR][1000 genomes]
rs56169848	0.89[EUR][1000 genomes]
rs56333151	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72726695	0.85[EUR][1000 genomes]
rs72728459	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71758600-71772800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:71771400-71773400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:71771600-71772600	ZNF genes & repeats	Liver	Liver
4	chr14:71771800-71786400	Weak transcription	Pancreas	Pancrea
5	chr14:71772000-71772800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:71772200-71772800	ZNF genes & repeats	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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