Variant report

Variant	rs11624555
Chromosome Location	chr14:71931078-71931079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf57-1	chr14:71927903-71931274	ENSG00000251156

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11626368	0.99[EUR][1000 genomes]
rs11627196	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs1473130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs17109223	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs17109228	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs56169848	0.80[EUR][1000 genomes]
rs56333151	0.81[EUR][1000 genomes]
rs72728459	0.85[EUR][1000 genomes]
rs72728502	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71908200-71935400	Weak transcription	Primary T cells from cord blood	blood
2	chr14:71915800-71938600	Weak transcription	Small Intestine	intestine
3	chr14:71916400-71932000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr14:71916600-71932800	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:71920200-71931800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:71921800-71933200	Weak transcription	Osteobl	bone
7	chr14:71921800-71940600	Weak transcription	Spleen	Spleen
8	chr14:71922000-71931800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:71922000-71933000	Weak transcription	Fetal Lung	lung
10	chr14:71922200-71932800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:71922200-71944600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr14:71925000-71932000	Weak transcription	Thymus	Thymus
13	chr14:71925800-71940600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:71926400-71932600	Weak transcription	Brain Substantia Nigra	brain
15	chr14:71927200-71938600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:71927200-71940400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:71927400-71932800	Weak transcription	Stomach Mucosa	stomach
18	chr14:71927600-71938800	Weak transcription	NHEK	skin
19	chr14:71927800-71932200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr14:71927800-71938800	Weak transcription	HMEC	breast
21	chr14:71928000-71939200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:71928000-71940600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:71928000-71940600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr14:71928000-71944800	Weak transcription	Primary B cells from cord blood	blood
25	chr14:71928200-71933400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr14:71929200-71964200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr14:71929400-71931200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr14:71929800-71931600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr14:71929800-71931600	Weak transcription	K562	blood
30	chr14:71930200-71954200	Weak transcription	Gastric	stomach
31	chr14:71930200-71955600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:71930800-71931600	Weak transcription	Hela-S3	cervix
33	chr14:71930800-71932800	Weak transcription	Brain Anterior Caudate	brain
34	chr14:71930800-71938200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr14:71931000-71932000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:71931000-71932200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:71931000-71932800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr14:71931000-71933800	Weak transcription	HSMM	muscle
39	chr14:71931000-71936600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr14:71931000-71938600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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