Variant report

Variant	rs11627159
Chromosome Location	chr14:64570869-64570870
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11158526	1.00[AFR][1000 genomes]
rs11158529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11625888	1.00[AFR][1000 genomes]
rs11628107	1.00[AFR][1000 genomes]
rs12432035	1.00[AFR][1000 genomes]
rs12434427	1.00[AFR][1000 genomes]
rs12435492	1.00[AFR][1000 genomes]
rs17825431	0.87[ASN][1000 genomes]
rs34843668	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:64481400-64574000	Weak transcription	Stomach Mucosa	stomach
3	chr14:64519400-64592000	Weak transcription	Fetal Brain Male	brain
4	chr14:64526800-64577000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:64542800-64574000	Weak transcription	HUVEC	blood vessel
6	chr14:64542800-64575400	Weak transcription	Hela-S3	cervix
7	chr14:64543000-64576400	Weak transcription	NHDF-Ad	bronchial
8	chr14:64544000-64616200	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr14:64547000-64573800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:64548400-64590800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr14:64549800-64579800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:64554400-64576400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:64556600-64576400	Weak transcription	NHLF	lung
14	chr14:64557000-64577200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:64557200-64581200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:64558600-64581600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr14:64560000-64572200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr14:64561600-64582400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:64562800-64580200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:64562800-64596200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr14:64563200-64579600	Weak transcription	HSMM	muscle
22	chr14:64563400-64579600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:64565400-64571800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr14:64565400-64574200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:64565400-64579600	Weak transcription	Spleen	Spleen
26	chr14:64565400-64580000	Weak transcription	Lung	lung
27	chr14:64565600-64581200	Weak transcription	Colonic Mucosa	Colon
28	chr14:64565800-64572200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:64565800-64588600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr14:64566400-64571600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr14:64566400-64572200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr14:64566400-64576200	Weak transcription	HMEC	breast
33	chr14:64566400-64580000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr14:64567200-64616200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:64567400-64572400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:64567400-64573000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:64567400-64577400	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr14:64567600-64572600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:64567600-64573400	Strong transcription	Placenta	Placenta
41	chr14:64567600-64577000	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr14:64567600-64577600	Strong transcription	Primary T cells from cord blood	blood
43	chr14:64567800-64572600	Strong transcription	Adipose Nuclei	Adipose
44	chr14:64567800-64584800	Weak transcription	Fetal Heart	heart
45	chr14:64568000-64571200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr14:64568200-64572800	Strong transcription	Fetal Lung	lung
47	chr14:64568200-64572800	Strong transcription	Thymus	Thymus
48	chr14:64568200-64574400	Strong transcription	Fetal Intestine Large	intestine
49	chr14:64568200-64582800	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr14:64568400-64571200	Strong transcription	Cortex derived primary cultured neurospheres	brain

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