Variant report

Variant	rs11158529
Chromosome Location	chr14:64565961-64565962
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	SYNE2	hsa-miR-26b-5p	chr14:64565953-64565973

Variant related genes	Relation type
SYNE2	miRNA target site

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11158526	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs1152580	1.00[CEU][hapmap]
rs1152596	1.00[CEU][hapmap]
rs11625888	1.00[AFR][1000 genomes]
rs11627159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11628107	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11850509	1.00[CEU][hapmap]
rs12432035	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12434427	1.00[AFR][1000 genomes]
rs12435492	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1256049	1.00[CEU][hapmap]
rs1256053	1.00[CEU][hapmap]
rs1256055	1.00[CEU][hapmap]
rs1256060	1.00[CEU][hapmap]
rs1256066	1.00[CEU][hapmap]
rs17825431	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs34843668	1.00[AFR][1000 genomes]
rs944050	1.00[CEU][hapmap]
rs944460	1.00[CEU][hapmap]
rs944461	1.00[CEU][hapmap]
rs944462	1.00[YRI][hapmap]
rs953592	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:64481400-64574000	Weak transcription	Stomach Mucosa	stomach
3	chr14:64489400-64568600	Weak transcription	Small Intestine	intestine
4	chr14:64519400-64592000	Weak transcription	Fetal Brain Male	brain
5	chr14:64525400-64566600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:64526800-64577000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:64528000-64567400	Weak transcription	Fetal Heart	heart
8	chr14:64529400-64566800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:64542800-64574000	Weak transcription	HUVEC	blood vessel
10	chr14:64542800-64575400	Weak transcription	Hela-S3	cervix
11	chr14:64543000-64576400	Weak transcription	NHDF-Ad	bronchial
12	chr14:64544000-64616200	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr14:64547000-64573800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:64548400-64590800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:64549800-64570200	Weak transcription	Psoas Muscle	Psoas
16	chr14:64549800-64579800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:64551800-64568200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:64554000-64566400	Strong transcription	Dnd41	blood
19	chr14:64554000-64566600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr14:64554200-64566600	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:64554400-64566600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr14:64554400-64576400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr14:64555000-64566400	Strong transcription	Primary T cells from cord blood	blood
24	chr14:64556400-64566400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr14:64556600-64566400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:64556600-64576400	Weak transcription	NHLF	lung
27	chr14:64557000-64577200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:64557200-64581200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr14:64558600-64581600	Weak transcription	Primary B cells from peripheral blood	blood
30	chr14:64560000-64569000	Weak transcription	Fetal Kidney	kidney
31	chr14:64560000-64572200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr14:64561600-64566800	Strong transcription	Placenta	Placenta
33	chr14:64561600-64582400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:64561800-64566000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr14:64561800-64566400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
36	chr14:64561800-64566400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr14:64562200-64566600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr14:64562400-64566400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
39	chr14:64562400-64566400	Strong transcription	Adipose Nuclei	Adipose
40	chr14:64562600-64566400	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr14:64562600-64566400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr14:64562600-64566400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr14:64562800-64570600	Weak transcription	Fetal Thymus	thymus
44	chr14:64562800-64580200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr14:64562800-64596200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr14:64563000-64566200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:64563000-64566400	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:64563000-64566600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr14:64563000-64570200	Weak transcription	NHEK	skin
50	chr14:64563200-64579600	Weak transcription	HSMM	muscle

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