Variant report

Variant	rs953592
Chromosome Location	chr14:64710749-64710750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11158526	1.00[CEU][hapmap]
rs11158529	1.00[CEU][hapmap]
rs1152580	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1152585	0.89[EUR][1000 genomes]
rs1152596	1.00[CEU][hapmap]
rs1152602	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11625778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs11628107	1.00[CEU][hapmap]
rs11629158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12432035	1.00[CEU][hapmap]
rs12435492	1.00[CEU][hapmap]
rs1255996	1.00[YRI][hapmap]
rs1256027	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs1256032	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1256034	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1256049	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1256053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256055	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256060	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1256066	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1256104	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs1256105	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs1256114	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1256119	0.85[EUR][1000 genomes]
rs2357482	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2776606	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4899135	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs4902278	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs7144437	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs8015278	0.95[JPT][hapmap]
rs944050	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs944052	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs944459	0.95[CHB][hapmap]
rs944460	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs944461	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv902021	chr14:64647646-64715794	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64690200-64711200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:64698800-64716600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:64702600-64715400	Weak transcription	Fetal Stomach	stomach
4	chr14:64703200-64716800	Weak transcription	Brain Germinal Matrix	brain
5	chr14:64707400-64712800	Weak transcription	Thymus	Thymus
6	chr14:64707400-64715400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr14:64710600-64711600	Enhancers	Fetal Heart	heart
8	chr14:64710600-64711600	Enhancers	Ovary	ovary

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