Variant report

Variant	rs1256034
Chromosome Location	chr14:64745125-64745126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64742475..64745477-chr14:64747736..64750527,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140009	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1152580	0.85[EUR][1000 genomes]
rs1152585	0.84[CHB][hapmap];0.89[EUR][1000 genomes]
rs1152596	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1152602	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11625778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11629158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1255994	1.00[MEX][hapmap]
rs1256027	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1256032	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256049	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1256053	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1256055	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1256060	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1256066	1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1256104	1.00[ASW][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1256105	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1256114	0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap]
rs1256119	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1256122	0.86[EUR][1000 genomes]
rs2357482	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs2776606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4899135	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs4902278	0.85[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap]
rs7144437	1.00[ASW][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap]
rs8015278	1.00[GIH][hapmap];0.95[JPT][hapmap]
rs941697	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs944050	1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs944052	0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs944459	0.95[CHB][hapmap];0.92[CHD][hapmap]
rs944460	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs944461	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs953592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1307	chr14:64742037-64787315	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64727600-64757600	Weak transcription	Ovary	ovary
2	chr14:64735400-64757200	Weak transcription	Thymus	Thymus
3	chr14:64743800-64745200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:64743800-64745600	Enhancers	HUVEC	blood vessel
5	chr14:64744800-64745800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr14:64744800-64746200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr14:64745000-64745400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:64745000-64745600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:64745000-64746000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:64745000-64746000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr14:64745000-64746000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr14:64745000-64746800	Enhancers	H1 Cell Line	embryonic stem cell

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