Variant report

Variant	rs2357482
Chromosome Location	chr14:64851477-64851478
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64849072..64851783-chr14:64852563..64854681,2	K562	blood:
2	chr14:64849395..64851590-chr14:64852646..64856063,3	MCF-7	breast:
3	chr14:64849483..64852419-chr14:64853173..64856118,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100714	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10149005	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1152596	0.84[JPT][hapmap]
rs11625778	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs11629158	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12100648	0.86[AMR][1000 genomes]
rs1256027	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1256032	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1256034	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs1256049	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs1256053	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs1256055	0.95[JPT][hapmap]
rs1256094	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1256096	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1256103	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1256104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1256105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1256114	0.90[JPT][hapmap]
rs12591011	0.90[ASN][1000 genomes]
rs12591015	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1266976	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2093209	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2983734	0.92[ASN][1000 genomes]
rs2983740	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902281	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902282	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7144437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7145462	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8015278	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs944052	0.85[JPT][hapmap]
rs944460	0.95[JPT][hapmap]
rs944461	0.95[JPT][hapmap]
rs953592	0.85[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64816400-64853400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:64839200-64853800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:64843800-64853400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:64844200-64854000	Weak transcription	Ovary	ovary
5	chr14:64847000-64853000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:64848600-64852400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:64849400-64854000	Weak transcription	Small Intestine	intestine
8	chr14:64851000-64853200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:64851400-64853800	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links