Variant report

Variant	rs1256104
Chromosome Location	chr14:64828543-64828544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64827990..64829806-chr14:64970650..64972651,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10149005	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1152596	1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11625778	0.84[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11629158	0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1255994	1.00[MEX][hapmap]
rs1256027	0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1256032	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs1256034	1.00[ASW][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1256049	0.89[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap]
rs1256053	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1256055	0.95[JPT][hapmap]
rs1256066	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1256094	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1256096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1256103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256114	0.82[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1256115	0.90[ASN][1000 genomes]
rs1256119	0.93[ASN][1000 genomes]
rs1256121	0.87[ASN][1000 genomes]
rs12591015	0.80[ASN][1000 genomes]
rs1266976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2093209	0.81[EUR][1000 genomes]
rs2357482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2983740	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4899135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4902281	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4902282	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7144437	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7145462	0.81[EUR][1000 genomes]
rs8015278	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs941697	0.93[ASN][1000 genomes]
rs944050	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs944052	0.82[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs944460	0.82[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap]
rs944461	0.82[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs953592	0.85[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64816400-64853400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:64827600-64830200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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