Variant report

Variant	rs1256115
Chromosome Location	chr14:64807981-64807982
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000214770	TF binding region
ESR2	TF binding region
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11625778	0.92[ASN][1000 genomes]
rs11629158	0.95[ASN][1000 genomes]
rs1256027	0.84[ASN][1000 genomes]
rs1256096	0.87[ASN][1000 genomes]
rs1256103	0.90[ASN][1000 genomes]
rs1256104	0.90[ASN][1000 genomes]
rs1256105	0.90[ASN][1000 genomes]
rs1256114	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256116	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1256117	0.98[EUR][1000 genomes]
rs1256118	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1256119	0.96[ASN][1000 genomes]
rs1256120	0.99[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1256121	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1266976	0.88[ASN][1000 genomes]
rs28590754	0.97[EUR][1000 genomes]
rs941697	0.96[ASN][1000 genomes]
rs944052	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64806200-64809000	Weak transcription	Brain Angular Gyrus	brain
2	chr14:64806200-64819200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:64806400-64809400	Weak transcription	Brain Germinal Matrix	brain
4	chr14:64806400-64809600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:64806400-64809800	Weak transcription	Pancreas	Pancrea
6	chr14:64807400-64808400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr14:64807600-64827400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links