Variant report

Variant	rs28590754
Chromosome Location	chr14:64800437-64800438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000140009	Chromatin interaction
ENSG00000214770	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1256114	0.95[EUR][1000 genomes]
rs1256115	0.97[EUR][1000 genomes]
rs1256116	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256117	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256118	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256120	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256121	0.96[EUR][1000 genomes]
rs1256122	0.96[ASN][1000 genomes]
rs944052	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64792000-64803800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:64792000-64803800	Weak transcription	Osteobl	bone
3	chr14:64794000-64803200	Weak transcription	Hela-S3	cervix
4	chr14:64798600-64803800	Weak transcription	HMEC	breast
5	chr14:64799000-64803800	Weak transcription	HepG2	liver
6	chr14:64800200-64803200	Weak transcription	A549	lung
7	chr14:64800400-64804200	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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