Variant report

Variant	rs1256116
Chromosome Location	chr14:64807883-64807884
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr14:64807376-64808204	K562	blood:	n/a	n/a
2	CBX3	chr14:64807418-64807917	K562	blood:	n/a	n/a
3	SETDB1	chr14:64807262-64808302	K562	blood:	n/a	n/a
4	SETDB1	chr14:64807403-64807941	K562	blood:	n/a	n/a
5	KAP1	chr14:64807430-64807925	HEK293	kidney:	n/a	n/a
6	TRIM28	chr14:64807491-64807893	K562	blood:	n/a	n/a
7	E2F6	chr14:64807369-64807892	H1-hESC	embryonic stem cell:	n/a	n/a
8	SETDB1	chr14:64807390-64808137	U2OS	brain:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64803252..64810182-chr14:64969982..64974147,9	K562	blood:
2	chr14:64803146..64808978-chr14:64966714..64972227,18	MCF-7	breast:
3	chr14:64803252..64809099-chr14:64968512..64973071,12	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ESR2	TF binding region
ENSG00000214770	TF binding region
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10137185	0.87[CEU][hapmap]
rs1152580	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs1256066	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs1256114	1.00[CEU][hapmap];0.83[YRI][hapmap];0.96[EUR][1000 genomes]
rs1256115	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1256117	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256120	0.94[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256121	0.97[EUR][1000 genomes]
rs1256122	0.97[ASN][1000 genomes]
rs1273196	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1952586	0.87[CEU][hapmap]
rs28590754	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8019025	0.87[CEU][hapmap]
rs944050	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs944052	1.00[CEU][hapmap];0.83[YRI][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64806200-64809000	Weak transcription	Brain Angular Gyrus	brain
2	chr14:64806200-64819200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:64806400-64809400	Weak transcription	Brain Germinal Matrix	brain
4	chr14:64806400-64809600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:64806400-64809800	Weak transcription	Pancreas	Pancrea
6	chr14:64807400-64808400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr14:64807600-64827400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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