Variant report

Variant	rs1256114
Chromosome Location	chr14:64810005-64810006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64808415..64811842-chr14:64942853..64946477,3	K562	blood:
2	chr14:64804770..64807247-chr14:64808907..64811060,2	K562	blood:
3	chr14:64803252..64810182-chr14:64969982..64974147,9	K562	blood:
4	chr14:64804156..64807340-chr14:64808252..64812511,7	MCF-7	breast:
5	chr14:64809378..64811742-chr14:64968642..64972431,4	MCF-7	breast:
6	chr14:64809574..64812301-chr14:64815587..64817784,2	MCF-7	breast:
7	chr14:64809273..64811150-chr14:65099348..65101805,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000140009	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000214770	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10137185	0.87[CEU][hapmap]
rs11625778	0.89[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11629158	0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs1256027	0.85[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1256032	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs1256034	0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap]
rs1256049	0.85[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs1256053	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs1256055	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs1256096	0.87[ASN][1000 genomes]
rs1256103	0.90[ASN][1000 genomes]
rs1256104	0.82[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1256105	0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1256115	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256116	1.00[CEU][hapmap];0.83[YRI][hapmap];0.96[EUR][1000 genomes]
rs1256117	0.96[EUR][1000 genomes]
rs1256118	0.95[EUR][1000 genomes]
rs1256119	0.96[ASN][1000 genomes]
rs1256120	1.00[CEU][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1256121	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1266976	0.88[ASN][1000 genomes]
rs1952586	0.87[CEU][hapmap]
rs2357482	0.90[JPT][hapmap]
rs28590754	0.95[EUR][1000 genomes]
rs4899135	0.90[JPT][hapmap]
rs4902278	0.90[JPT][hapmap]
rs7144437	0.95[JPT][hapmap]
rs8015278	0.90[JPT][hapmap]
rs8019025	0.87[CEU][hapmap]
rs941697	0.96[ASN][1000 genomes]
rs944052	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.94[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs944459	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs944460	0.85[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs944461	0.85[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs953592	0.90[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64806200-64819200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:64807600-64827400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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