Variant report

Variant	rs4902278
Chromosome Location	chr14:64862555-64862556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64860062..64863204-chr14:64866083..64868815,3	MCF-7	breast:
2	chr14:64852898..64856787-chr14:64858975..64865298,10	K562	blood:
3	chr14:64861003..64862910-chr14:64969282..64971568,2	K562	blood:
4	chr14:64860617..64863426-chr14:64887492..64890180,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000100714	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10149005	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1152596	1.00[GIH][hapmap];0.84[JPT][hapmap]
rs11625778	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs11629158	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1256027	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs1256032	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs1256034	0.85[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap]
rs1256049	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs1256053	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1256055	0.95[JPT][hapmap]
rs1256066	1.00[GIH][hapmap]
rs1256094	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256096	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1256103	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1256104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1256105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1256114	0.90[JPT][hapmap]
rs12591011	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12591015	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1266976	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2093209	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2357482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2983734	0.90[ASN][1000 genomes]
rs2983740	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4899135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902279	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4902281	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902282	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7144437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145462	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8015278	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs944050	1.00[GIH][hapmap]
rs944052	0.86[JPT][hapmap]
rs944460	1.00[GIH][hapmap];0.95[JPT][hapmap]
rs944461	0.95[JPT][hapmap]
rs953592	0.85[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856000-64869800	Weak transcription	Placenta	Placenta
2	chr14:64856000-64886200	Weak transcription	Fetal Brain Male	brain
3	chr14:64856000-64913000	Weak transcription	Small Intestine	intestine
4	chr14:64856200-64867200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:64856200-64870400	Weak transcription	Fetal Brain Female	brain
6	chr14:64856200-64870400	Weak transcription	Fetal Intestine Large	intestine
7	chr14:64856200-64882200	Weak transcription	HSMMtube	muscle
8	chr14:64856200-64883800	Weak transcription	Esophagus	oesophagus
9	chr14:64856200-64885600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:64856200-64886400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
12	chr14:64856400-64870400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr14:64856400-64870600	Weak transcription	Psoas Muscle	Psoas
14	chr14:64856400-64875800	Weak transcription	Thymus	Thymus
15	chr14:64856400-64877800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:64856400-64882400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr14:64856600-64867600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr14:64856600-64870600	Weak transcription	NH-A	brain
19	chr14:64856600-64879400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr14:64856800-64862800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:64856800-64867200	Weak transcription	Brain Germinal Matrix	brain
22	chr14:64856800-64867400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr14:64856800-64868400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr14:64856800-64868400	Weak transcription	Osteobl	bone
25	chr14:64856800-64868600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:64856800-64868600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr14:64856800-64870400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:64856800-64870600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr14:64856800-64877800	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr14:64856800-64881800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr14:64856800-64881800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr14:64856800-64882000	Weak transcription	Fetal Lung	lung
33	chr14:64856800-64882000	Weak transcription	NHLF	lung
34	chr14:64856800-64885800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr14:64857000-64862800	Strong transcription	A549	lung
36	chr14:64857000-64867400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr14:64857000-64868800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr14:64857000-64870600	Weak transcription	NHDF-Ad	bronchial
39	chr14:64857000-64881800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr14:64857200-64880400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr14:64858000-64870600	Weak transcription	Fetal Kidney	kidney
42	chr14:64858600-64868600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr14:64858600-64870600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr14:64858600-64872200	Weak transcription	Brain Hippocampus Middle	brain
45	chr14:64858800-64867400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:64858800-64869600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr14:64858800-64870400	Weak transcription	Primary B cells from cord blood	blood
48	chr14:64859000-64863000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr14:64859000-64878000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr14:64859000-64879400	Weak transcription	Lung	lung

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