Variant report

Variant	rs11625778
Chromosome Location	chr14:64773309-64773310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1048315	0.81[JPT][hapmap]
rs1152580	0.85[EUR][1000 genomes]
rs1152585	0.89[EUR][1000 genomes]
rs1152602	0.96[EUR][1000 genomes]
rs11629158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1256027	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1256032	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1256034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1256049	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs1256053	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs1256055	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs1256060	0.96[EUR][1000 genomes]
rs1256062	0.81[JPT][hapmap]
rs1256066	0.92[EUR][1000 genomes]
rs1256096	0.88[ASN][1000 genomes]
rs1256103	0.90[ASN][1000 genomes]
rs1256104	0.84[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1256105	0.84[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1256114	0.89[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1256115	0.92[ASN][1000 genomes]
rs1256119	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256121	0.89[ASN][1000 genomes]
rs1256122	0.86[EUR][1000 genomes]
rs1266976	0.89[ASN][1000 genomes]
rs2357482	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs2776606	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4899135	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs4902278	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs7144437	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs8015278	0.95[JPT][hapmap]
rs941697	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs944050	0.92[EUR][1000 genomes]
rs944052	0.90[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs944459	0.94[CHB][hapmap]
rs944460	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs944461	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs953592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1307	chr14:64742037-64787315	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64772600-64773600	Enhancers	HepG2	liver

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