Variant report

Variant	rs4899135
Chromosome Location	chr14:64869154-64869155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64868893..64872016-chr14:64968174..64970935,3	MCF-7	breast:
2	chr14:64859490..64861668-chr14:64868131..64870784,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10149005	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1152596	0.84[JPT][hapmap]
rs11625778	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs11629158	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1256027	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1256032	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1256034	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs1256049	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs1256053	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs1256055	0.95[JPT][hapmap]
rs1256094	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1256096	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1256103	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1256104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1256105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1256114	0.90[JPT][hapmap]
rs12591011	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12591015	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1266976	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2093209	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2357482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2983734	0.88[ASN][1000 genomes]
rs2983740	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902279	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4902281	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902282	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7144437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7145462	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8015278	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs944052	0.86[JPT][hapmap]
rs944460	0.95[JPT][hapmap]
rs944461	0.95[JPT][hapmap]
rs953592	0.85[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856000-64869800	Weak transcription	Placenta	Placenta
2	chr14:64856000-64886200	Weak transcription	Fetal Brain Male	brain
3	chr14:64856000-64913000	Weak transcription	Small Intestine	intestine
4	chr14:64856200-64870400	Weak transcription	Fetal Brain Female	brain
5	chr14:64856200-64870400	Weak transcription	Fetal Intestine Large	intestine
6	chr14:64856200-64882200	Weak transcription	HSMMtube	muscle
7	chr14:64856200-64883800	Weak transcription	Esophagus	oesophagus
8	chr14:64856200-64885600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:64856200-64886400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
11	chr14:64856400-64870400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:64856400-64870600	Weak transcription	Psoas Muscle	Psoas
13	chr14:64856400-64875800	Weak transcription	Thymus	Thymus
14	chr14:64856400-64877800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:64856400-64882400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr14:64856600-64870600	Weak transcription	NH-A	brain
17	chr14:64856600-64879400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr14:64856800-64870400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:64856800-64870600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr14:64856800-64877800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:64856800-64881800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:64856800-64881800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr14:64856800-64882000	Weak transcription	Fetal Lung	lung
24	chr14:64856800-64882000	Weak transcription	NHLF	lung
25	chr14:64856800-64885800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr14:64857000-64870600	Weak transcription	NHDF-Ad	bronchial
27	chr14:64857000-64881800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr14:64857200-64880400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr14:64858000-64870600	Weak transcription	Fetal Kidney	kidney
30	chr14:64858600-64870600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr14:64858600-64872200	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:64858800-64869600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr14:64858800-64870400	Weak transcription	Primary B cells from cord blood	blood
34	chr14:64859000-64878000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:64859000-64879400	Weak transcription	Lung	lung
36	chr14:64859200-64869200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr14:64859400-64870400	Weak transcription	Fetal Thymus	thymus
38	chr14:64859400-64870600	Weak transcription	Brain Anterior Caudate	brain
39	chr14:64859400-64875400	Weak transcription	Aorta	Aorta
40	chr14:64859400-64877000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:64860600-64877800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr14:64860800-64882400	Weak transcription	Spleen	Spleen
43	chr14:64861000-64870600	Weak transcription	Primary T cells from cord blood	blood
44	chr14:64861000-64870600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr14:64861000-64877000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr14:64861000-64877000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr14:64861000-64877800	Weak transcription	Left Ventricle	heart
48	chr14:64861000-64882200	Weak transcription	Ovary	ovary
49	chr14:64861000-64882400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr14:64861000-64882400	Weak transcription	Gastric	stomach

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