Variant report

Variant	rs7145462
Chromosome Location	chr14:64873996-64873997
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64873085..64874663-chr14:64971006..64972620,2	MCF-7	breast:
2	chr14:64872336..64875141-chr14:64877233..64879758,2	MCF-7	breast:
3	chr14:64854192..64857167-chr14:64872531..64874972,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000100714	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10149005	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1256094	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1256096	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1256103	0.81[EUR][1000 genomes]
rs1256104	0.81[EUR][1000 genomes]
rs1256105	0.81[EUR][1000 genomes]
rs12591011	0.88[ASN][1000 genomes]
rs12591015	0.91[ASN][1000 genomes]
rs1266976	0.81[EUR][1000 genomes]
rs2093209	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2357482	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2983734	0.85[ASN][1000 genomes]
rs2983740	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4899135	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902278	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902281	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902282	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7144437	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856000-64886200	Weak transcription	Fetal Brain Male	brain
2	chr14:64856000-64913000	Weak transcription	Small Intestine	intestine
3	chr14:64856200-64882200	Weak transcription	HSMMtube	muscle
4	chr14:64856200-64883800	Weak transcription	Esophagus	oesophagus
5	chr14:64856200-64885600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:64856200-64886400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
8	chr14:64856400-64875800	Weak transcription	Thymus	Thymus
9	chr14:64856400-64877800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:64856400-64882400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:64856600-64879400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:64856800-64877800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr14:64856800-64881800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr14:64856800-64881800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr14:64856800-64882000	Weak transcription	Fetal Lung	lung
16	chr14:64856800-64882000	Weak transcription	NHLF	lung
17	chr14:64856800-64885800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr14:64857000-64881800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr14:64857200-64880400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr14:64859000-64878000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:64859000-64879400	Weak transcription	Lung	lung
22	chr14:64859400-64875400	Weak transcription	Aorta	Aorta
23	chr14:64859400-64877000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:64860600-64877800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:64860800-64882400	Weak transcription	Spleen	Spleen
26	chr14:64861000-64877000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr14:64861000-64877000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:64861000-64877800	Weak transcription	Left Ventricle	heart
29	chr14:64861000-64882200	Weak transcription	Ovary	ovary
30	chr14:64861000-64882400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr14:64861000-64882400	Weak transcription	Gastric	stomach
32	chr14:64861200-64877000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:64861200-64886000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr14:64861800-64881800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr14:64861800-64882200	Weak transcription	Pancreas	Pancrea
36	chr14:64861800-64882200	Weak transcription	Right Ventricle	heart
37	chr14:64861800-64890600	Weak transcription	Colonic Mucosa	Colon
38	chr14:64861800-64931600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr14:64862000-64876400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr14:64862400-64879000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr14:64862600-64898200	Weak transcription	Fetal Heart	heart
42	chr14:64862600-64905200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr14:64866800-64874400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr14:64867200-64927000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr14:64867200-64929600	Strong transcription	Dnd41	blood
46	chr14:64867400-64874400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:64867400-64874800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr14:64867600-64877400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr14:64867600-64878600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:64867800-64883800	Weak transcription	Brain Germinal Matrix	brain

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