Variant report
| Variant | rs1256096 |
|---|---|
| Chromosome Location | chr14:64834410-64834411 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:64804101..64806101-chr14:64833927..64836490,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000140009 | Chromatin interaction |
| ENSG00000214770 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10149005 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11625778 | 0.88[ASN][1000 genomes] |
| rs11629158 | 0.89[ASN][1000 genomes] |
| rs1256027 | 0.82[ASN][1000 genomes] |
| rs1256094 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1256103 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1256104 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1256105 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1256114 | 0.87[ASN][1000 genomes] |
| rs1256115 | 0.87[ASN][1000 genomes] |
| rs1256119 | 0.91[ASN][1000 genomes] |
| rs1256121 | 0.85[ASN][1000 genomes] |
| rs12591015 | 0.81[ASN][1000 genomes] |
| rs1266976 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2093209 | 0.81[EUR][1000 genomes] |
| rs2357482 | 0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2983740 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4899135 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4902278 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4902281 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4902282 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7144437 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7145462 | 0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs941697 | 0.91[ASN][1000 genomes] |
| rs944052 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902019 | chr14:64395569-64882380 | Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:64816400-64853400 | Weak transcription | Primary B cells from cord blood | blood |
| 2 | chr14:64834200-64834800 | Enhancers | HepG2 | liver |
