Variant report

Variant	rs11629158
Chromosome Location	chr14:64795511-64795512
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64789559..64792915-chr14:64794645..64797859,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1152585	0.93[CHB][hapmap];0.81[EUR][1000 genomes]
rs1152596	0.81[CHB][hapmap]
rs1152597	0.81[CHB][hapmap]
rs1152602	0.89[EUR][1000 genomes]
rs11625778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1256027	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1256032	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1256034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1256049	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1256053	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs1256055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1256060	0.89[EUR][1000 genomes]
rs1256066	0.85[EUR][1000 genomes]
rs1256094	0.81[ASN][1000 genomes]
rs1256096	0.89[ASN][1000 genomes]
rs1256103	0.92[ASN][1000 genomes]
rs1256104	0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1256105	0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1256114	0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs1256115	0.95[ASN][1000 genomes]
rs1256119	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1256121	0.92[ASN][1000 genomes]
rs1256122	0.93[EUR][1000 genomes]
rs1266976	0.90[ASN][1000 genomes]
rs2357482	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2776606	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4899135	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4902278	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7144437	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs8015278	0.95[JPT][hapmap]
rs941697	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs944050	0.85[EUR][1000 genomes]
rs944052	0.88[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs944459	0.93[CHB][hapmap]
rs944460	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs944461	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs944462	1.00[YRI][hapmap]
rs953592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64792000-64803800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:64792000-64803800	Weak transcription	Osteobl	bone
3	chr14:64794000-64803200	Weak transcription	Hela-S3	cervix

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