Variant report

Variant	rs34843668
Chromosome Location	chr14:64519709-64519710
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10136783	0.97[ASN][1000 genomes]
rs10138292	0.97[ASN][1000 genomes]
rs10141709	0.97[ASN][1000 genomes]
rs10145173	0.97[ASN][1000 genomes]
rs11158526	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158529	1.00[AFR][1000 genomes]
rs11622567	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625888	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627159	1.00[AFR][1000 genomes]
rs11628107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850509	0.82[ASN][1000 genomes]
rs12432035	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12434427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435492	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs17101637	0.97[ASN][1000 genomes]
rs17101640	0.97[ASN][1000 genomes]
rs2357347	1.00[ASN][1000 genomes]
rs34256889	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58222836	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720306	0.97[ASN][1000 genomes]
rs72720309	0.97[ASN][1000 genomes]
rs74056285	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:64468800-64527200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:64475200-64527200	Weak transcription	Fetal Heart	heart
4	chr14:64479200-64526200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:64481400-64574000	Weak transcription	Stomach Mucosa	stomach
6	chr14:64489200-64526600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:64489400-64568600	Weak transcription	Small Intestine	intestine
8	chr14:64491200-64565200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:64492200-64547400	Weak transcription	Colonic Mucosa	Colon
10	chr14:64499000-64538800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:64510600-64527200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:64510800-64526400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:64511000-64526200	Weak transcription	Pancreas	Pancrea
14	chr14:64511200-64527000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:64512000-64524200	Strong transcription	Dnd41	blood
16	chr14:64512400-64524400	Strong transcription	Placenta	Placenta
17	chr14:64512400-64527600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:64512600-64524200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr14:64512800-64521400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:64513800-64520200	Weak transcription	NHEK	skin
21	chr14:64513800-64522000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr14:64513800-64526400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:64514000-64520200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr14:64514000-64526200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:64514200-64526400	Weak transcription	Spleen	Spleen
26	chr14:64514600-64526400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr14:64514600-64527200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr14:64515000-64519800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:64515000-64527600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:64515200-64520000	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr14:64515600-64522600	Weak transcription	Fetal Intestine Small	intestine
32	chr14:64515600-64526800	Weak transcription	Hela-S3	cervix
33	chr14:64516600-64541400	Weak transcription	HSMM	muscle
34	chr14:64517000-64520200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:64518000-64521600	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr14:64518000-64521600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:64518000-64527400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr14:64518200-64520600	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr14:64518200-64520600	Strong transcription	GM12878-XiMat	blood
40	chr14:64518200-64523000	Strong transcription	Fetal Stomach	stomach
41	chr14:64518400-64519800	Strong transcription	Primary B cells from cord blood	blood
42	chr14:64518400-64519800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr14:64518400-64519800	Strong transcription	Fetal Lung	lung
44	chr14:64518400-64520400	Strong transcription	Liver	Liver
45	chr14:64518400-64520400	Strong transcription	Fetal Brain Female	brain
46	chr14:64518400-64520600	Strong transcription	Fetal Muscle Trunk	muscle
47	chr14:64518400-64520600	Strong transcription	Fetal Muscle Leg	muscle
48	chr14:64518400-64520600	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr14:64518400-64520600	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr14:64518400-64521600	Strong transcription	Primary T cells from cord blood	blood

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