Variant report

Variant	rs11629081
Chromosome Location	chr14:70655120-70655121
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11621233	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11622454	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11623788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11623909	0.86[AMR][1000 genomes]
rs11626919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879701	1.00[AFR][1000 genomes]
rs12880065	1.00[AFR][1000 genomes]
rs12889575	1.00[AFR][1000 genomes]
rs12890852	1.00[AFR][1000 genomes]
rs12891402	1.00[AFR][1000 genomes]
rs12898006	1.00[AFR][1000 genomes]
rs17474359	1.00[AFR][1000 genomes]
rs34506335	1.00[AFR][1000 genomes]
rs34668417	1.00[AFR][1000 genomes]
rs35034872	1.00[AFR][1000 genomes]
rs35224988	1.00[AFR][1000 genomes]
rs35547503	1.00[AFR][1000 genomes]
rs35697534	1.00[AFR][1000 genomes]
rs55692830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56113470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731861	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72731878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72731883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72731896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72731898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72733703	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72733705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72733709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72733718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72733725	1.00[AFR][1000 genomes]
rs72733739	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70653000-70655200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70653000-70655200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:70653200-70656400	Active TSS	HSMM	muscle
4	chr14:70653400-70655200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:70653400-70656200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
6	chr14:70653400-70656400	Active TSS	Brain Angular Gyrus	brain
7	chr14:70653400-70656400	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr14:70653400-70656600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr14:70653400-70656600	Active TSS	Fetal Brain Female	brain
10	chr14:70653600-70655200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
11	chr14:70653600-70655600	Active TSS	Right Atrium	heart
12	chr14:70653600-70656000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr14:70653600-70656200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:70653600-70656200	Active TSS	Fetal Lung	lung
15	chr14:70653600-70656200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
16	chr14:70653600-70656600	Active TSS	HSMMtube	muscle
17	chr14:70653600-70656800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chr14:70653600-70656800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
19	chr14:70653800-70655200	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
20	chr14:70653800-70655200	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:70653800-70655400	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
22	chr14:70653800-70655600	Flanking Active TSS	HUVEC	blood vessel
23	chr14:70653800-70655800	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
24	chr14:70653800-70656000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
25	chr14:70653800-70656200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr14:70653800-70656200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
27	chr14:70653800-70656200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr14:70653800-70656200	Active TSS	Brain Substantia Nigra	brain
29	chr14:70653800-70656200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
30	chr14:70653800-70656400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
31	chr14:70653800-70656400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
32	chr14:70653800-70656400	Active TSS	Psoas Muscle	Psoas
33	chr14:70654000-70655200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:70654000-70655200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:70654000-70655400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr14:70654000-70656200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:70654000-70656200	Bivalent/Poised TSS	NHLF	lung
38	chr14:70654000-70656400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr14:70654200-70655200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:70654200-70655200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
41	chr14:70654200-70655200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
42	chr14:70654200-70655200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
43	chr14:70654200-70655200	Flanking Active TSS	Lung	lung
44	chr14:70654200-70655200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr14:70654200-70655400	Flanking Active TSS	Pancreas	Pancrea
46	chr14:70654200-70655600	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr14:70654200-70655600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
48	chr14:70654200-70655800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr14:70654200-70655800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:70654200-70656000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links