Variant report
| Variant | rs72731861 |
|---|---|
| Chromosome Location | chr14:70667927-70667928 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11621233 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11622454 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11623231 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11623788 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11626919 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11628786 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11629081 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1593376 | 0.84[EUR][1000 genomes] |
| rs2296918 | 0.82[EUR][1000 genomes] |
| rs4902794 | 0.84[EUR][1000 genomes] |
| rs55692830 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56113470 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7153452 | 0.84[EUR][1000 genomes] |
| rs72731878 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72731882 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72731883 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72731885 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72731887 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72731896 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72731898 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72733703 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72733705 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72733709 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72733718 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832826 | chr14:70559589-70723464 | Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv902075 | chr14:70612618-70919016 | Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:70656400-70688400 | Weak transcription | Psoas Muscle | Psoas |
| 2 | chr14:70660400-70670600 | Weak transcription | Primary hematopoietic stem cells | blood |
