Variant report

Variant	rs72733703
Chromosome Location	chr14:70705969-70705970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11621233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11622454	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11623231	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11623788	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11623909	0.86[AMR][1000 genomes]
rs11626919	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11628786	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11629081	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1593376	0.88[EUR][1000 genomes]
rs2162125	0.88[EUR][1000 genomes]
rs2296918	0.91[EUR][1000 genomes]
rs4902794	0.93[EUR][1000 genomes]
rs55692830	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56113470	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7153452	0.93[EUR][1000 genomes]
rs72731861	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72731878	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72731882	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72731883	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72731885	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72731887	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72731896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72731898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72733705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72733709	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72733718	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv983840	chr14:70696676-70714926	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70697400-70719400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:70701800-70721200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70704400-70706400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:70705000-70706000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:70705600-70706400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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