Variant report

Variant	rs1593376
Chromosome Location	chr14:70686556-70686557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70683028..70687657-chr14:70688132..70693219,7	K562	blood:
2	chr14:70686436..70688109-chr14:70689739..70691554,2	MCF-7	breast:
3	chr14:70683028..70687657-chr14:70688132..70693219,5	K562	blood:

Variant related genes	Relation type
ENSG00000258422	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11621233	0.88[EUR][1000 genomes]
rs11622454	0.87[EUR][1000 genomes]
rs11623231	0.91[EUR][1000 genomes]
rs11623788	0.80[EUR][1000 genomes]
rs11626919	0.89[EUR][1000 genomes]
rs11628786	0.87[EUR][1000 genomes]
rs12588653	0.87[ASN][1000 genomes]
rs12590427	0.84[ASN][1000 genomes]
rs1364963	0.81[AFR][1000 genomes]
rs1364966	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1465498	1.00[YRI][hapmap]
rs1958187	1.00[YRI][hapmap]
rs2162125	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2194881	0.81[AFR][1000 genomes]
rs2296918	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4899340	0.85[ASN][1000 genomes]
rs4902793	0.81[AFR][1000 genomes]
rs4902794	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55692830	0.89[EUR][1000 genomes]
rs56113470	0.89[EUR][1000 genomes]
rs59398189	0.87[ASN][1000 genomes]
rs61654805	0.84[ASN][1000 genomes]
rs61740021	0.87[ASN][1000 genomes]
rs61745654	0.84[ASN][1000 genomes]
rs6573940	0.81[AFR][1000 genomes]
rs7145582	0.80[YRI][hapmap]
rs7149733	0.87[ASN][1000 genomes]
rs7153452	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72731861	0.84[EUR][1000 genomes]
rs72731878	0.89[EUR][1000 genomes]
rs72731882	0.91[EUR][1000 genomes]
rs72731883	0.91[EUR][1000 genomes]
rs72731885	0.91[EUR][1000 genomes]
rs72731887	0.91[EUR][1000 genomes]
rs72731896	0.88[EUR][1000 genomes]
rs72731898	0.88[EUR][1000 genomes]
rs72733703	0.88[EUR][1000 genomes]
rs72733705	0.88[EUR][1000 genomes]
rs72733709	0.80[EUR][1000 genomes]
rs72733718	0.80[EUR][1000 genomes]
rs73280734	0.87[ASN][1000 genomes]
rs73280744	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv565008	chr14:70681037-70689272	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv565009	chr14:70681037-70689390	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70656400-70688400	Weak transcription	Psoas Muscle	Psoas

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