Variant report

Variant	rs1958187
Chromosome Location	chr14:70683740-70683741
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70670090..70672950-chr14:70682600..70684123,2	MCF-7	breast:
2	chr14:70683028..70687657-chr14:70688132..70693219,7	K562	blood:
3	chr14:70683028..70687657-chr14:70688132..70693219,5	K562	blood:

Variant related genes	Relation type
ENSG00000258422	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10137139	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144306	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850014	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1364963	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1364966	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1425615	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1425616	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1465498	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1469252	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1571371	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1571372	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1593376	1.00[YRI][hapmap]
rs2194881	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899338	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899339	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902794	0.83[AFR][1000 genomes]
rs4902800	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902802	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573940	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573945	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7145582	0.83[YRI][hapmap]
rs7147173	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7149733	0.94[AFR][1000 genomes]
rs7150899	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153452	0.83[AFR][1000 genomes]
rs8012405	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018296	0.89[AFR][1000 genomes]
rs8018633	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8020558	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv565008	chr14:70681037-70689272	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv565009	chr14:70681037-70689390	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv976297	chr14:70683711-70684880	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70656400-70688400	Weak transcription	Psoas Muscle	Psoas

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