Variant report

Variant	rs1425615
Chromosome Location	chr14:70681037-70681038
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10137139	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144306	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850014	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1364963	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1364966	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1425616	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1465498	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1469252	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs150947	1.00[MEX][hapmap]
rs1571371	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1571372	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1593376	1.00[YRI][hapmap]
rs1958187	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2194881	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2296918	0.81[AFR][1000 genomes]
rs4899338	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902793	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902794	0.84[AFR][1000 genomes]
rs4902800	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902802	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573940	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573945	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7145582	0.81[YRI][hapmap]
rs7147173	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7149733	0.93[AFR][1000 genomes]
rs7150899	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153452	0.84[AFR][1000 genomes]
rs8012405	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018296	0.88[AFR][1000 genomes]
rs8018633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8020558	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv565008	chr14:70681037-70689272	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv565009	chr14:70681037-70689390	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70656400-70688400	Weak transcription	Psoas Muscle	Psoas
2	chr14:70680200-70681200	Enhancers	Primary hematopoietic stem cells	blood
3	chr14:70680200-70681400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:70680400-70681200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:70680600-70681200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:70681000-70681400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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