Variant report

Variant	rs10144306
Chromosome Location	chr14:70723693-70723694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10137139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850014	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1364963	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1364966	0.82[AFR][1000 genomes]
rs1425615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1425616	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1465498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1469252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1571371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1571372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1958187	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2194881	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899338	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899339	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902793	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573940	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573945	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147173	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7149495	0.89[AFR][1000 genomes]
rs7149733	0.95[AFR][1000 genomes]
rs7150899	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8012405	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018296	1.00[AFR][1000 genomes]
rs8018633	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8020558	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv826972	chr14:70717268-70726035	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70721000-70724000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr14:70721600-70724400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:70721600-70726600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:70722000-70724400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:70722200-70726000	Weak transcription	HepG2	liver
6	chr14:70723200-70724000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:70723400-70723800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr14:70723400-70723800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:70723400-70723800	Bivalent/Poised TSS	Primary T helper naive cells from peripheral blood	blood
10	chr14:70723400-70723800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:70723600-70723800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:70723600-70724000	Active TSS	H9 Cell Line	embryonic stem cell
13	chr14:70723600-70724000	Enhancers	Primary hematopoietic stem cells	blood
14	chr14:70723600-70724600	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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