Variant report

Variant	rs10137139
Chromosome Location	chr14:70721260-70721261
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70716825..70718477-chr14:70720427..70722449,2	MCF-7	breast:
2	chr14:70519745..70521992-chr14:70721079..70723653,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10144306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850014	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1364963	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1364966	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1425615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1425616	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1465498	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1469252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs150947	1.00[MEX][hapmap]
rs1571371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1571372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1593376	1.00[YRI][hapmap]
rs1958187	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2194881	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899338	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899339	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902793	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573940	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573945	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7145582	0.81[YRI][hapmap]
rs7147173	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7149495	0.89[AFR][1000 genomes]
rs7149733	0.95[AFR][1000 genomes]
rs7150899	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8012405	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018296	1.00[AFR][1000 genomes]
rs8018633	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8020558	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv826972	chr14:70717268-70726035	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70721000-70721600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr14:70721000-70722000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:70721000-70722200	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr14:70721000-70722200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:70721000-70722200	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr14:70721000-70722200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
7	chr14:70721000-70722200	Active TSS	HepG2	liver
8	chr14:70721000-70722600	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr14:70721000-70722800	Active TSS	H1 Cell Line	embryonic stem cell
10	chr14:70721000-70722800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
11	chr14:70721000-70724000	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr14:70721200-70721400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:70721200-70721400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:70721200-70721400	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:70721200-70721400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:70721200-70721400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:70721200-70721400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr14:70721200-70721400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
20	chr14:70721200-70721400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
21	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
22	chr14:70721200-70721400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:70721200-70721400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
32	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
33	chr14:70721200-70721400	Bivalent Enhancer	Brain Substantia Nigra	brain
34	chr14:70721200-70721400	Flanking Active TSS	Fetal Intestine Small	intestine
35	chr14:70721200-70721400	Flanking Active TSS	Fetal Kidney	kidney
36	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
37	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
38	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
39	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
40	chr14:70721200-70721400	Bivalent/Poised TSS	Left Ventricle	heart
41	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
42	chr14:70721200-70721400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
43	chr14:70721200-70721400	Flanking Active TSS	Right Ventricle	heart
44	chr14:70721200-70721400	Flanking Active TSS	GM12878-XiMat	blood
45	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
46	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
47	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	NH-A	brain
48	chr14:70721200-70721400	Flanking Bivalent TSS/Enh	NHEK	skin
49	chr14:70721200-70721600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr14:70721200-70721600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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