Variant report

Variant	rs7147173
Chromosome Location	chr14:70709623-70709624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10137139	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144306	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1364963	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1364966	0.86[AFR][1000 genomes]
rs1425615	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1425616	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1465498	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1469252	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1571371	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1571372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1958187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2194881	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2296918	0.83[AFR][1000 genomes]
rs4899338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899339	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902793	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902794	0.82[AFR][1000 genomes]
rs4902800	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902802	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573945	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7149495	0.84[AFR][1000 genomes]
rs7149733	1.00[AFR][1000 genomes]
rs7150899	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153452	0.82[AFR][1000 genomes]
rs8012405	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018296	0.95[AFR][1000 genomes]
rs8018633	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8020558	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv983840	chr14:70696676-70714926	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70697400-70719400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:70701800-70721200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70707000-70711800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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