Variant report
| Variant | rs8018296 |
|---|---|
| Chromosome Location | chr14:70728445-70728446 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:70195404..70198253-chr14:70727101..70728631,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10137139 | 1.00[AFR][1000 genomes] |
| rs10144306 | 1.00[AFR][1000 genomes] |
| rs11850014 | 0.93[AFR][1000 genomes] |
| rs1364963 | 0.90[AFR][1000 genomes] |
| rs1364966 | 0.82[AFR][1000 genomes] |
| rs1425615 | 0.88[AFR][1000 genomes] |
| rs1425616 | 0.85[AFR][1000 genomes] |
| rs1465498 | 1.00[AFR][1000 genomes] |
| rs1469252 | 1.00[AFR][1000 genomes] |
| rs1571371 | 1.00[AFR][1000 genomes] |
| rs1571372 | 1.00[AFR][1000 genomes] |
| rs1958187 | 0.89[AFR][1000 genomes] |
| rs2194881 | 0.90[AFR][1000 genomes] |
| rs4899338 | 0.87[AFR][1000 genomes] |
| rs4899339 | 0.88[AFR][1000 genomes] |
| rs4902793 | 0.90[AFR][1000 genomes] |
| rs4902800 | 1.00[AFR][1000 genomes] |
| rs4902802 | 1.00[AFR][1000 genomes] |
| rs6573940 | 0.90[AFR][1000 genomes] |
| rs6573945 | 0.93[AFR][1000 genomes] |
| rs7147173 | 0.95[AFR][1000 genomes] |
| rs7149495 | 0.89[AFR][1000 genomes] |
| rs7149733 | 0.95[AFR][1000 genomes] |
| rs7150899 | 0.96[AFR][1000 genomes] |
| rs8012405 | 0.93[AFR][1000 genomes] |
| rs8018633 | 0.88[AFR][1000 genomes] |
| rs8020558 | 0.87[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902075 | chr14:70612618-70919016 | Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:70723800-70744200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
