Variant report

Variant	rs61740021
Chromosome Location	chr14:70701225-70701226
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12588653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590427	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1593376	0.87[ASN][1000 genomes]
rs2162125	1.00[ASN][1000 genomes]
rs2296918	0.96[ASN][1000 genomes]
rs4899340	0.98[ASN][1000 genomes]
rs4902794	1.00[ASN][1000 genomes]
rs59398189	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59507789	1.00[EUR][1000 genomes]
rs61654805	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61745654	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149733	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153452	1.00[ASN][1000 genomes]
rs73280734	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280744	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv983840	chr14:70696676-70714926	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70691000-70703400	Weak transcription	K562	blood
2	chr14:70697400-70719400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:70700800-70701800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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