Variant report

Variant	rs11631198
Chromosome Location	chr15:75061318-75061319
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:29)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74926428..74928297-chr15:75060418..75062112,2	K562	blood:
2	chr15:74665680..74666890-chr15:75060904..75061896,5	K562	blood:
3	chr15:74913082..74914237-chr15:75060932..75061835,6	MCF-7	breast:
4	chr15:74927136..74928342-chr15:75060569..75061905,25	MCF-7	breast:
5	chr15:74924093..74925016-chr15:75060866..75061400,2	MCF-7	breast:
6	chr15:74924667..74926194-chr15:75061014..75063397,2	MCF-7	breast:
7	chr15:74923752..74925135-chr15:75060810..75061793,8	MCF-7	breast:
8	chr15:74913162..74914007-chr15:75060879..75061822,6	MCF-7	breast:
9	chr15:75060913..75062896-chr15:75196962..75199239,2	K562	blood:
10	chr15:74933224..74935053-chr15:75061299..75063816,2	MCF-7	breast:
11	chr15:75056268..75058478-chr15:75059962..75062607,3	K562	blood:
12	chr15:75060561..75062896-chr15:75196962..75199741,2	K562	blood:
13	chr15:74933237..74935346-chr15:75060041..75062599,2	K562	blood:
14	chr15:74922603..74925094-chr15:75061118..75062996,2	MCF-7	breast:
15	chr15:75061295..75062973-chr15:75074582..75077010,2	K562	blood:
16	chr15:74927223..74928249-chr15:75060532..75061799,9	MCF-7	breast:
17	chr15:74925684..74926757-chr15:75060857..75061874,3	MCF-7	breast:
18	chr15:74921493..74922466-chr15:75061289..75062251,2	MCF-7	breast:
19	chr15:75056268..75058478-chr15:75059962..75062462,2	K562	blood:
20	chr15:74921154..74924652-chr15:75061303..75063546,3	K562	blood:
21	chr15:75060882..75061394-chr15:75135597..75136214,2	K562	blood:
22	chr15:74926277..74928672-chr15:75060421..75062184,32	K562	blood:
23	chr15:74926309..74927880-chr15:75061284..75064051,2	MCF-7	breast:
24	chr15:74926605..74928994-chr15:75060559..75063448,5	MCF-7	breast:
25	chr15:74906941..74909010-chr15:75059898..75062184,2	MCF-7	breast:
26	chr15:74913135..74914353-chr15:75061140..75061799,4	K562	blood:
27	chr15:75059199..75061491-chr15:75101386..75103400,2	MCF-7	breast:
28	chr15:74907408..74909628-chr15:75059869..75062492,2	K562	blood:
29	chr15:74665953..74666593-chr15:75061227..75061819,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000103653	Chromatin interaction
ENSG00000178761	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000179151	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11072501	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11636419	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11637770	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593233	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593808	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17861162	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56931723	0.82[EUR][1000 genomes]
rs58806801	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74025834	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74025836	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74025838	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74025840	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75044800-75062600	Weak transcription	Right Atrium	heart
2	chr15:75047200-75063000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:75055200-75063200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr15:75055600-75065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:75056000-75069000	Weak transcription	Lung	lung
6	chr15:75056200-75063200	Weak transcription	Spleen	Spleen
7	chr15:75060000-75061400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:75060000-75061400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:75060200-75061400	Bivalent Enhancer	Placenta	Placenta
10	chr15:75060600-75061400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr15:75060800-75061400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:75061000-75061400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr15:75061000-75061400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:75061000-75061400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:75061000-75061400	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr15:75061000-75061400	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:75061000-75061400	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr15:75061000-75061400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:75061000-75061400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:75061000-75061400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:75061000-75061400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr15:75061000-75061400	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr15:75061000-75061400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr15:75061000-75061400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:75061000-75061400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr15:75061000-75061400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr15:75061000-75061400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:75061000-75061400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:75061000-75061400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
30	chr15:75061000-75061400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
31	chr15:75061000-75061400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:75061000-75061400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr15:75061000-75061400	Enhancers	Liver	Liver
34	chr15:75061000-75061400	Enhancers	Brain Anterior Caudate	brain
35	chr15:75061000-75061400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:75061000-75061400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr15:75061000-75061400	Enhancers	Fetal Brain Male	brain
38	chr15:75061000-75061400	Bivalent Enhancer	Fetal Muscle Leg	muscle
39	chr15:75061000-75061400	Bivalent Enhancer	Fetal Stomach	stomach
40	chr15:75061000-75061400	Enhancers	Ovary	ovary
41	chr15:75061000-75061400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr15:75061000-75061400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
43	chr15:75061000-75061400	Enhancers	Dnd41	blood
44	chr15:75061000-75061400	Enhancers	HMEC	breast
45	chr15:75061000-75061400	Flanking Active TSS	HUVEC	blood vessel
46	chr15:75061000-75061400	Active TSS	NHDF-Ad	bronchial
47	chr15:75061000-75061400	Active TSS	Osteobl	bone
48	chr15:75061000-75061600	Enhancers	Primary B cells from peripheral blood	blood
49	chr15:75061000-75061600	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr15:75061000-75061600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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