Variant report

Variant	rs74025840
Chromosome Location	chr15:75060659-75060660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74926428..74928297-chr15:75060418..75062112,2	K562	blood:
2	chr15:74927136..74928342-chr15:75060569..75061905,25	MCF-7	breast:
3	chr15:74926116..74927005-chr15:75060070..75060801,2	MCF-7	breast:
4	chr15:75056268..75058478-chr15:75059962..75062607,3	K562	blood:
5	chr15:75060561..75062896-chr15:75196962..75199741,2	K562	blood:
6	chr15:74933237..74935346-chr15:75060041..75062599,2	K562	blood:
7	chr15:74927223..74928249-chr15:75060532..75061799,9	MCF-7	breast:
8	chr15:75051704..75054183-chr15:75058091..75061237,4	K562	blood:
9	chr15:75056268..75058478-chr15:75059962..75062462,2	K562	blood:
10	chr15:74926277..74928672-chr15:75060421..75062184,32	K562	blood:
11	chr15:74926605..74928994-chr15:75060559..75063448,5	MCF-7	breast:
12	chr15:74906941..74909010-chr15:75059898..75062184,2	MCF-7	breast:
13	chr15:75059199..75061491-chr15:75101386..75103400,2	MCF-7	breast:
14	chr15:74907408..74909628-chr15:75059869..75062492,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000179151	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000178761	Chromatin interaction
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11072501	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11631198	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636419	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11637770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593213	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593808	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17861162	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56931723	0.82[EUR][1000 genomes]
rs58806801	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74025834	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74025836	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74025838	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75044800-75062600	Weak transcription	Right Atrium	heart
2	chr15:75047200-75063000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:75055200-75063200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr15:75055400-75061000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:75055600-75061000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:75055600-75061000	Weak transcription	HUVEC	blood vessel
7	chr15:75055600-75065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:75056000-75060800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:75056000-75061000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:75056000-75061000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:75056000-75061000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:75056000-75069000	Weak transcription	Lung	lung
13	chr15:75056200-75061000	Weak transcription	HMEC	breast
14	chr15:75056200-75063200	Weak transcription	Spleen	Spleen
15	chr15:75056400-75061000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:75056400-75061000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:75056400-75061000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:75060000-75061400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr15:75060000-75061400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:75060200-75061400	Bivalent Enhancer	Placenta	Placenta
21	chr15:75060400-75061200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr15:75060600-75061000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
23	chr15:75060600-75061000	Enhancers	A549	lung
24	chr15:75060600-75061000	Enhancers	HepG2	liver
25	chr15:75060600-75061200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr15:75060600-75061200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr15:75060600-75061200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:75060600-75061200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr15:75060600-75061400	Bivalent Enhancer	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links