Variant report

Variant	rs11632743
Chromosome Location	chr15:73740518-73740519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11635553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11636749	1.00[EUR][1000 genomes]
rs11639269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9635375	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1051734	chr15:73717945-73753660	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73735800-73741000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:73739600-73740600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:73740000-73741600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr15:73740200-73740800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr15:73740200-73740800	Enhancers	K562	blood
6	chr15:73740200-73741000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr15:73740200-73741000	Enhancers	Gastric	stomach
8	chr15:73740200-73741200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr15:73740200-73741200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr15:73740200-73741400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:73740200-73741600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr15:73740200-73741600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:73740200-73741800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:73740400-73740600	Flanking Active TSS	Stomach Mucosa	stomach
15	chr15:73740400-73740800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr15:73740400-73740800	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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