Variant report

Variant	rs11635553
Chromosome Location	chr15:73749608-73749609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11072426	1.00[CEU][hapmap]
rs11632743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11636749	1.00[EUR][1000 genomes]
rs11639269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16958010	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16958014	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7168262	1.00[CEU][hapmap]
rs7168736	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9635375	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1051734	chr15:73717945-73753660	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
IgG glycosylation	23382691	GWAS catalog

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73748600-73749800	Enhancers	Duodenum Mucosa	Duodenum
2	chr15:73748600-73749800	Weak transcription	A549	lung
3	chr15:73749400-73750000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr15:73749400-73750000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr15:73749600-73750000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr15:73749600-73750000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr15:73749600-73750000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr15:73749600-73750000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr15:73749600-73750000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr15:73749600-73750000	Enhancers	Fetal Heart	heart
11	chr15:73749600-73750400	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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