Variant report

Variant	rs7168736
Chromosome Location	chr15:73846497-73846498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73840832..73844239-chr15:73845811..73848090,3	K562	blood:
2	chr15:73844384..73847229-chr15:73925427..73927341,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10851862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072422	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072425	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11072426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072435	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11632314	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11638829	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639269	1.00[EUR][1000 genomes]
rs12050665	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16957980	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16958010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306463	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2306464	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56084520	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56296045	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60401042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168262	1.00[CEU][hapmap]
rs7178269	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9635319	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9635375	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73808200-73847400	Weak transcription	Left Ventricle	heart
2	chr15:73820800-73847600	Weak transcription	Aorta	Aorta
3	chr15:73826800-73847600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:73827800-73847600	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:73832600-73847600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:73833000-73847600	Weak transcription	Liver	Liver
7	chr15:73833000-73848000	Weak transcription	HMEC	breast
8	chr15:73833200-73847400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:73834600-73847000	Weak transcription	Fetal Intestine Small	intestine
10	chr15:73834600-73847400	Weak transcription	Fetal Intestine Large	intestine
11	chr15:73835000-73848400	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:73835400-73848800	Weak transcription	Primary B cells from cord blood	blood
13	chr15:73836200-73847600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:73836200-73850600	Weak transcription	HUVEC	blood vessel
15	chr15:73836400-73847000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:73836800-73847400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:73836800-73847600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:73837000-73860000	Weak transcription	Gastric	stomach
19	chr15:73837200-73848400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:73838200-73848600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:73838200-73850400	Weak transcription	Right Ventricle	heart
22	chr15:73838200-73851000	Weak transcription	Colonic Mucosa	Colon
23	chr15:73838800-73847200	Weak transcription	Primary T cells from cord blood	blood
24	chr15:73842000-73847600	Weak transcription	Esophagus	oesophagus
25	chr15:73842200-73846800	Weak transcription	Fetal Stomach	stomach
26	chr15:73842400-73847400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr15:73842600-73847400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:73842800-73847400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:73842800-73847600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:73842800-73847600	Weak transcription	NHLF	lung
31	chr15:73843000-73848400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr15:73843000-73848400	Weak transcription	Fetal Heart	heart
33	chr15:73843200-73846800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr15:73843400-73846600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:73843400-73847400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:73843400-73847400	Weak transcription	Spleen	Spleen
37	chr15:73843400-73849200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:73843600-73847600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:73843600-73847800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:73843600-73848600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:73843800-73847400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr15:73843800-73851200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:73844000-73856200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:73844200-73863800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr15:73844400-73847000	Weak transcription	Osteobl	bone
46	chr15:73844600-73847000	Weak transcription	NHEK	skin
47	chr15:73844600-73848200	Weak transcription	HSMM	muscle
48	chr15:73844800-73847000	Weak transcription	HSMMtube	muscle
49	chr15:73844800-73850600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:73844800-73865200	Weak transcription	Stomach Mucosa	stomach

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