Variant report

Variant	rs10851862
Chromosome Location	chr15:73853796-73853797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73853723..73855768-chr15:73855937..73858133,2	MCF-7	breast:
2	chr15:73853457..73854076-chr7:108209612..108210281,2	Hela-S3	cervix:
3	chr15:73848290..73849987-chr15:73853101..73855624,2	K562	blood:

Variant related genes	Relation type
ENSG00000135241	Chromatin interaction
ENSG00000128590	Chromatin interaction
ENSG00000177683	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11072422	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072425	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11072426	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11638829	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639269	1.00[EUR][1000 genomes]
rs12050665	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16957980	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16958010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958014	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306463	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2306464	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56084520	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56296045	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60401042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168736	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178269	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9635319	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9635375	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73837000-73860000	Weak transcription	Gastric	stomach
2	chr15:73844000-73856200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:73844200-73863800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:73844800-73865200	Weak transcription	Stomach Mucosa	stomach
5	chr15:73846000-73855800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr15:73846000-73856200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:73846000-73856600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:73846000-73857000	Strong transcription	Stomach Smooth Muscle	stomach
9	chr15:73846200-73856600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:73846200-73863800	Strong transcription	Duodenum Mucosa	Duodenum
11	chr15:73846400-73854800	Weak transcription	Psoas Muscle	Psoas
12	chr15:73846400-73863200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:73846800-73854800	Weak transcription	Brain Angular Gyrus	brain
14	chr15:73846800-73855400	Weak transcription	Brain Germinal Matrix	brain
15	chr15:73847000-73856000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:73847000-73856200	Strong transcription	Osteobl	bone
17	chr15:73847000-73856800	Strong transcription	NHEK	skin
18	chr15:73847200-73854800	Weak transcription	Brain Substantia Nigra	brain
19	chr15:73847200-73855400	Weak transcription	Fetal Thymus	thymus
20	chr15:73847400-73855800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr15:73847400-73856200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:73847400-73856200	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:73847400-73856400	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr15:73847400-73856600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr15:73847400-73856600	Strong transcription	Left Ventricle	heart
26	chr15:73847400-73862000	Strong transcription	Fetal Intestine Large	intestine
27	chr15:73847400-73866000	Strong transcription	Adipose Nuclei	Adipose
28	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr15:73847600-73855400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:73847600-73855400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:73847600-73856200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:73847600-73858200	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr15:73847600-73865000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr15:73847600-73865400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:73847600-73865800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:73847600-73866200	Strong transcription	Liver	Liver
37	chr15:73847600-73882400	Strong transcription	Placenta	Placenta
38	chr15:73847800-73856400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:73847800-73858400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr15:73848000-73856400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:73848000-73860000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:73848000-73860600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr15:73848200-73855800	Strong transcription	HSMM	muscle
44	chr15:73848200-73856200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:73848200-73856800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:73848600-73856000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:73848600-73860600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr15:73848600-73868600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr15:73848600-73868600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:73848800-73858200	Strong transcription	Primary B cells from peripheral blood	blood

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