Variant report

Variant	rs2306463
Chromosome Location	chr15:73907445-73907446
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73905420..73907478-chr15:73909358..73912347,2	MCF-7	breast:
2	chr15:73905787..73908717-chr15:73914619..73916779,2	MCF-7	breast:
3	chr15:73890210..73895158-chr15:73907012..73911430,4	MCF-7	breast:
4	chr15:73907248..73910394-chr15:73923600..73926433,4	MCF-7	breast:
5	chr15:73903235..73905876-chr15:73906751..73908895,2	K562	blood:
6	chr15:73907163..73909580-chr15:73921080..73922650,2	K562	blood:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10851862	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11072425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11072426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634549	1.00[AMR][1000 genomes]
rs11638829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11639269	1.00[EUR][1000 genomes]
rs12050665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16957980	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16958010	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16958014	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2306464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35976691	1.00[AMR][1000 genomes]
rs55743544	0.85[ASN][1000 genomes]
rs55878233	1.00[AMR][1000 genomes]
rs56084520	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56100682	1.00[AMR][1000 genomes]
rs56296045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60401042	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7168736	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7178269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8039466	1.00[AMR][1000 genomes]
rs9635319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9635375	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73895000-73910000	Weak transcription	Hela-S3	cervix
2	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:73895200-73921400	Weak transcription	Fetal Thymus	thymus
4	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus
5	chr15:73895400-73922400	Weak transcription	Colonic Mucosa	Colon
6	chr15:73895600-73910000	Weak transcription	HMEC	breast
7	chr15:73895800-73907600	Weak transcription	Stomach Mucosa	stomach
8	chr15:73895800-73909800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:73895800-73910200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:73895800-73912200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:73895800-73912600	Weak transcription	Brain Substantia Nigra	brain
12	chr15:73895800-73913600	Weak transcription	A549	lung
13	chr15:73895800-73923600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:73895800-73924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:73896200-73912400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:73896200-73912600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:73896400-73910000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:73896400-73912200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:73896400-73920400	Weak transcription	Primary T cells from cord blood	blood
20	chr15:73897000-73910200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr15:73897400-73911800	Weak transcription	Fetal Intestine Large	intestine
22	chr15:73898000-73910000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:73899600-73908800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr15:73899600-73924200	Weak transcription	Gastric	stomach
25	chr15:73899800-73909200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr15:73900400-73909800	Weak transcription	Aorta	Aorta
27	chr15:73900400-73921800	Weak transcription	Primary B cells from cord blood	blood
28	chr15:73900400-73924000	Weak transcription	Fetal Muscle Leg	muscle
29	chr15:73900600-73907800	Weak transcription	Brain Anterior Caudate	brain
30	chr15:73900600-73908200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr15:73900800-73912800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr15:73901000-73910200	Weak transcription	Fetal Lung	lung
33	chr15:73901200-73913000	Weak transcription	Brain Angular Gyrus	brain
34	chr15:73901200-73915200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr15:73901400-73909800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr15:73901400-73916400	Weak transcription	Fetal Kidney	kidney
37	chr15:73901400-73916800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr15:73901400-73920600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr15:73901600-73907800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:73901600-73909000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr15:73901600-73919800	Weak transcription	Adipose Nuclei	Adipose
42	chr15:73901800-73908000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:73901800-73910800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:73901800-73912200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr15:73901800-73916600	Weak transcription	Right Ventricle	heart
46	chr15:73901800-73922400	Weak transcription	Right Atrium	heart
47	chr15:73902000-73910400	Weak transcription	Psoas Muscle	Psoas
48	chr15:73902000-73911800	Weak transcription	Fetal Intestine Small	intestine
49	chr15:73902000-73912200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:73902000-73912200	Weak transcription	Small Intestine	intestine

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