Variant report

Variant	rs55878233
Chromosome Location	chr15:73691978-73691979
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11072422	1.00[AMR][1000 genomes]
rs11072425	1.00[AMR][1000 genomes]
rs11072426	1.00[AMR][1000 genomes]
rs11638829	1.00[AMR][1000 genomes]
rs12050665	1.00[AMR][1000 genomes]
rs2306463	1.00[AMR][1000 genomes]
rs2306464	1.00[AMR][1000 genomes]
rs28596496	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35976691	1.00[AMR][1000 genomes]
rs56084520	1.00[AMR][1000 genomes]
rs56100682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56296045	1.00[AMR][1000 genomes]
rs62015511	1.00[AMR][1000 genomes]
rs7178269	1.00[AMR][1000 genomes]
rs9635319	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73691400-73692000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr15:73691400-73692000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr15:73691400-73692000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr15:73691400-73692200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr15:73691600-73692200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:73691800-73695400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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