Variant report

Variant	rs35976691
Chromosome Location	chr15:73776430-73776431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11072422	1.00[AMR][1000 genomes]
rs11072425	1.00[AMR][1000 genomes]
rs11072426	1.00[AMR][1000 genomes]
rs11634549	1.00[AMR][1000 genomes]
rs11638829	1.00[AMR][1000 genomes]
rs12050665	1.00[AMR][1000 genomes]
rs2306463	1.00[AMR][1000 genomes]
rs2306464	1.00[AMR][1000 genomes]
rs55878233	1.00[AMR][1000 genomes]
rs56084520	1.00[AMR][1000 genomes]
rs56100682	1.00[AMR][1000 genomes]
rs56296045	1.00[AMR][1000 genomes]
rs62015511	1.00[AMR][1000 genomes]
rs7178269	1.00[AMR][1000 genomes]
rs8039466	1.00[AMR][1000 genomes]
rs9635319	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv525433	chr15:73766072-73833600	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73775000-73777200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr15:73775400-73777800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr15:73775600-73776800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:73775600-73778600	Enhancers	K562	blood
5	chr15:73776200-73776800	Enhancers	Right Ventricle	heart
6	chr15:73776400-73777400	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links