Variant report

Variant	rs11072426
Chromosome Location	chr15:73920948-73920949
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:73912420..73913927-chr15:73920373..73922798,2	K562	blood:
2	chr15:73899288..73902117-chr15:73920914..73923748,3	MCF-7	breast:
3	chr15:73893372..73895147-chr15:73920840..73923079,2	MCF-7	breast:
4	chr15:73910340..73912093-chr15:73919702..73922481,2	K562	blood:
5	chr15:73888462..73890253-chr15:73918321..73921060,2	K562	blood:
6	chr15:73918833..73921692-chr15:73976133..73978716,2	MCF-7	breast:
7	chr15:73877125..73879241-chr15:73920215..73923156,2	K562	blood:
8	chr15:73918568..73921533-chr15:73923050..73927898,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10851862	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11072425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11072435	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11632314	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11634549	1.00[AMR][1000 genomes]
rs11638829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11639269	1.00[EUR][1000 genomes]
rs12050665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16957980	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16958010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16958014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2306463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35976691	1.00[AMR][1000 genomes]
rs55743544	0.85[ASN][1000 genomes]
rs55878233	1.00[AMR][1000 genomes]
rs56084520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56100682	1.00[AMR][1000 genomes]
rs56296045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60401042	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7168262	1.00[CEU][hapmap]
rs7168736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7178269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8039466	1.00[AMR][1000 genomes]
rs9635319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9635375	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:73895200-73921400	Weak transcription	Fetal Thymus	thymus
3	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus
4	chr15:73895400-73922400	Weak transcription	Colonic Mucosa	Colon
5	chr15:73895800-73923600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:73895800-73924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:73899600-73924200	Weak transcription	Gastric	stomach
8	chr15:73900400-73921800	Weak transcription	Primary B cells from cord blood	blood
9	chr15:73900400-73924000	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:73901800-73922400	Weak transcription	Right Atrium	heart
11	chr15:73902800-73924400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:73903400-73924000	Weak transcription	Thymus	Thymus
13	chr15:73904800-73921400	Weak transcription	K562	blood
14	chr15:73904800-73924200	Weak transcription	Lung	lung
15	chr15:73910200-73922400	Weak transcription	Aorta	Aorta
16	chr15:73910400-73921200	Weak transcription	NH-A	brain
17	chr15:73910400-73922200	Weak transcription	HSMM	muscle
18	chr15:73910400-73924200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:73910600-73921200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:73911000-73921600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:73912800-73921200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:73912800-73922600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr15:73912800-73922600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr15:73915600-73921400	Enhancers	NHEK	skin
25	chr15:73915800-73921200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:73916000-73921400	Weak transcription	Psoas Muscle	Psoas
27	chr15:73916000-73921400	Enhancers	Rectal Smooth Muscle	rectum
28	chr15:73916000-73922800	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr15:73916000-73922800	Enhancers	Fetal Heart	heart
30	chr15:73916600-73921800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:73916800-73923600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr15:73917200-73921400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr15:73917200-73921400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr15:73917200-73921400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:73917200-73921600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:73917200-73921600	Weak transcription	Fetal Stomach	stomach
37	chr15:73917200-73922600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr15:73917600-73921200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr15:73918000-73921800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:73918000-73922600	Weak transcription	Ovary	ovary
41	chr15:73918000-73923200	Weak transcription	Right Ventricle	heart
42	chr15:73918200-73921400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:73918200-73921400	Enhancers	A549	lung
44	chr15:73918200-73922800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:73918200-73924000	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr15:73918200-73924200	Enhancers	Stomach Mucosa	stomach
47	chr15:73918400-73923200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:73918600-73921200	Enhancers	HepG2	liver
49	chr15:73918600-73921400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:73919000-73921200	Weak transcription	HMEC	breast

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