Variant report

Variant	rs11634549
Chromosome Location	chr15:74002496-74002497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr15:74002281-74003024	MCF-7	breast:	n/a	n/a
2	ZNF217	chr15:74002487-74002727	MCF-7	breast:	n/a	n/a
3	FOXM1	chr15:74002119-74002936	MCF-7	breast:	n/a	n/a
4	ESR1	chr15:74002410-74002874	T-47D	breast:	n/a	n/a
5	ESR1	chr15:74002412-74002885	T-47D	breast:	n/a	n/a
6	ESR1	chr15:74002361-74002839	T-47D	breast:	n/a	n/a
7	EP300	chr15:74002216-74003026	MCF-7	breast:	n/a	n/a
8	HA-E2F1	chr15:74002464-74002890	MCF-7	breast:	n/a	n/a
9	ESR1	chr15:74002413-74002901	T-47D	breast:	n/a	n/a
10	ESR1	chr15:74002418-74002867	T-47D	breast:	n/a	n/a
11	GATA3	chr15:74002469-74002859	MCF-7	breast:	n/a	n/a
12	GATA3	chr15:74002016-74003089	MCF-7	breast:	n/a	chr15:74002200-74002210

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:107527039..107527540-chr15:74002254..74002802,2	MCF-7	breast:
2	chr15:74002110..74003104-chr15:74073062..74074228,17	MCF-7	breast:
3	chr15:74002231..74003126-chr15:74232770..74233458,3	MCF-7	breast:
4	chr15:73925288..73927166-chr15:74001061..74002856,2	MCF-7	breast:
5	chr15:74002226..74003064-chr15:74316885..74317629,3	MCF-7	breast:
6	chr15:74002207..74002895-chr15:74022574..74023389,3	MCF-7	breast:
7	chr15:74002166..74003145-chr15:74232538..74233420,9	MCF-7	breast:
8	chr15:74002173..74002839-chr15:74243349..74244156,3	MCF-7	breast:
9	chr15:74002226..74003103-chr15:74316885..74317643,5	MCF-7	breast:
10	chr15:73987752..73988860-chr15:74002088..74003109,20	MCF-7	breast:
11	chr15:73993873..73996840-chr15:74002371..74004783,2	MCF-7	breast:
12	chr15:74002177..74003073-chr15:74073212..74074020,2	MCF-7	breast:
13	chr15:74002166..74003145-chr15:74232560..74233376,6	MCF-7	breast:
14	chr15:74002220..74002792-chr15:74019672..74020532,2	MCF-7	breast:
15	chr15:74002339..74003053-chr15:74243505..74244060,2	MCF-7	breast:
16	chr15:74002181..74003094-chr15:74206046..74206877,4	MCF-7	breast:
17	chr15:74002181..74003130-chr15:74035048..74036007,13	MCF-7	breast:
18	chr15:74002346..74003075-chr15:74069347..74070141,5	MCF-7	breast:
19	chr15:73987844..73988474-chr15:74002251..74002868,2	MCF-7	breast:
20	chr15:73996066..73998855-chr15:74002172..74005149,2	MCF-7	breast:
21	chr15:74002347..74003098-chr15:74034906..74035966,3	MCF-7	breast:
22	chr15:74002449..74003122-chr15:74088672..74089439,2	MCF-7	breast:
23	chr15:74002150..74003130-chr15:74034989..74036028,29	MCF-7	breast:
24	chr15:73987848..73988819-chr15:74002175..74003049,9	MCF-7	breast:
25	chr15:74002209..74003136-chr15:74179538..74180134,2	MCF-7	breast:
26	chr15:74002241..74003107-chr15:75109478..75110334,3	MCF-7	breast:
27	chr15:74002110..74003032-chr15:74073251..74074228,9	MCF-7	breast:
28	chr15:74002181..74003094-chr15:74206093..74206877,2	MCF-7	breast:

No data

Variant related genes	Relation type
CD276	TF binding region
ENSG00000156642	Chromatin interaction
ENSG00000103855	Chromatin interaction
ENSG00000140464	Chromatin interaction

rs_ID	r²[population]
rs11072422	1.00[AMR][1000 genomes]
rs11072425	1.00[AMR][1000 genomes]
rs11072426	1.00[AMR][1000 genomes]
rs11638829	1.00[AMR][1000 genomes]
rs12050665	1.00[AMR][1000 genomes]
rs2306463	1.00[AMR][1000 genomes]
rs2306464	1.00[AMR][1000 genomes]
rs35976691	1.00[AMR][1000 genomes]
rs56084520	1.00[AMR][1000 genomes]
rs56296045	1.00[AMR][1000 genomes]
rs7178269	1.00[AMR][1000 genomes]
rs8039466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9635319	1.00[AMR][1000 genomes]

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
2	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
3	chr15:73990200-74007200	Weak transcription	Stomach Mucosa	stomach
4	chr15:73990200-74007600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73990400-74007200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:73990400-74007600	Strong transcription	Fetal Stomach	stomach
7	chr15:73990600-74006600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:73990600-74007400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
10	chr15:73990800-74009200	Weak transcription	Psoas Muscle	Psoas
11	chr15:73991000-74003400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr15:73991400-74004800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:73991400-74007200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:73992200-74007400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:73992600-74007400	Strong transcription	Fetal Muscle Trunk	muscle
16	chr15:73993000-74007400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:73993200-74007000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:73993400-74006400	Strong transcription	Liver	Liver
19	chr15:73993400-74007800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:73993600-74006800	Strong transcription	NHEK	skin
21	chr15:73993600-74007400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:73993600-74007400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:73993600-74007600	Strong transcription	Fetal Brain Female	brain
24	chr15:73993600-74008000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:73993800-74007400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:73994000-74006600	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr15:73994000-74007200	Strong transcription	Brain Germinal Matrix	brain
28	chr15:73994200-74006600	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:73994200-74006600	Strong transcription	Aorta	Aorta
30	chr15:73994200-74007200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:73994400-74006400	Strong transcription	NHLF	lung
32	chr15:73994400-74007400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:73994600-74007400	Strong transcription	Adipose Nuclei	Adipose
34	chr15:73994800-74007200	Strong transcription	Placenta Amnion	Placenta Amnion
35	chr15:73995200-74007200	Strong transcription	Placenta	Placenta
36	chr15:73995400-74006600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:73996200-74003800	Strong transcription	H9 Cell Line	embryonic stem cell
38	chr15:73996200-74006600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:73996200-74006800	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr15:73996400-74004200	Strong transcription	Brain Anterior Caudate	brain
41	chr15:73996400-74004200	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:73996400-74006200	Strong transcription	Rectal Smooth Muscle	rectum
43	chr15:73996400-74006400	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr15:73996600-74003800	Strong transcription	HepG2	liver
45	chr15:73996600-74004000	Strong transcription	Brain Cingulate Gyrus	brain
46	chr15:73996600-74004200	Strong transcription	NHDF-Ad	bronchial
47	chr15:73996600-74006400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr15:73996800-74003200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:73996800-74004000	Strong transcription	Fetal Lung	lung
50	chr15:73996800-74004200	Strong transcription	Osteobl	bone

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