Variant report

Variant	rs11072425
Chromosome Location	chr15:73869554-73869555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10851862	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11072422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11072426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11634549	1.00[AMR][1000 genomes]
rs11638829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11639269	1.00[EUR][1000 genomes]
rs12050665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16957980	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16958010	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16958014	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2306463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2306464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35976691	1.00[AMR][1000 genomes]
rs55878233	1.00[AMR][1000 genomes]
rs56084520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100682	1.00[AMR][1000 genomes]
rs56296045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60401042	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62015511	1.00[AMR][1000 genomes]
rs7168736	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7178269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8039466	1.00[AMR][1000 genomes]
rs9635319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9635375	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73847600-73882400	Strong transcription	Placenta	Placenta
3	chr15:73848800-73884800	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:73848800-73885000	Strong transcription	Primary B cells from cord blood	blood
5	chr15:73850200-73884400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:73850400-73870800	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr15:73852200-73874600	Weak transcription	Fetal Heart	heart
8	chr15:73855800-73872400	Strong transcription	Fetal Stomach	stomach
9	chr15:73856400-73878000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:73857400-73877200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:73857400-73884800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:73857600-73878000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:73857600-73885000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:73857800-73875600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr15:73858000-73870800	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:73858000-73884800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:73858200-73885800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr15:73859400-73870800	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:73859400-73882000	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:73860200-73871200	Strong transcription	Primary B cells from peripheral blood	blood
21	chr15:73860600-73885000	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr15:73862000-73872200	Genic enhancers	Fetal Intestine Large	intestine
23	chr15:73862200-73884800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr15:73863000-73870200	Weak transcription	K562	blood
25	chr15:73863000-73874800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr15:73863200-73873200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr15:73863200-73889400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:73863400-73875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr15:73863800-73882000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:73864800-73875200	Weak transcription	Fetal Brain Male	brain
31	chr15:73865400-73869600	Weak transcription	HSMM	muscle
32	chr15:73866000-73872800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:73866000-73874800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr15:73866000-73875200	Weak transcription	Colonic Mucosa	Colon
35	chr15:73866200-73870000	Weak transcription	Esophagus	oesophagus
36	chr15:73866200-73870400	Weak transcription	Brain Angular Gyrus	brain
37	chr15:73866200-73871600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:73866200-73874600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:73866400-73870200	Weak transcription	Hela-S3	cervix
40	chr15:73866400-73871800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr15:73866400-73872000	Weak transcription	Fetal Brain Female	brain
42	chr15:73866400-73873000	Weak transcription	Thymus	Thymus
43	chr15:73866400-73875000	Weak transcription	Stomach Mucosa	stomach
44	chr15:73866400-73878200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr15:73866600-73870600	Weak transcription	Fetal Lung	lung
46	chr15:73866600-73876800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:73866800-73870600	Weak transcription	Fetal Kidney	kidney
48	chr15:73866800-73873000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr15:73866800-73877200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:73866800-73884800	Strong transcription	Fetal Muscle Leg	muscle

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